RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 SYT2Q8N9I0 419 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-206ENST00000473405 TMEM161BQ8NDZ6 487 aa20.61■□□□□ 0.89
CCDC88B-206ENST00000473405 SNX27Q96L92 541 aa20.61■□□□□ 0.89
CCDC88B-206ENST00000473405 UROC1Q96N76 676 aa20.61■□□□□ 0.89
CCDC88B-206ENST00000473405 ZMAT2Q96NC0 199 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-206ENST00000473405 CCDC94Q9BW85 323 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-206ENST00000473405 SMC3Q9UQE7 1217 aa20.61■□□□□ 0.89
CCDC88B-206ENST00000473405 MYH15Q9Y2K3 1946 aa20.61■□□□□ 0.89
CCDC88B-206ENST00000473405 MAPTP10636 758 aaKnown RBP20.6■□□□□ 0.89
CCDC88B-206ENST00000473405 PLS3P13797 630 aa20.6■□□□□ 0.89
CCDC88B-206ENST00000473405 YARSP54577 528 aaKnown RBP20.6■□□□□ 0.89
CCDC88B-206ENST00000473405 PDXDC1Q6P996 788 aa20.6■□□□□ 0.89
CCDC88B-206ENST00000473405 DCLRE1AQ6PJP8 1040 aa20.6■□□□□ 0.89
CCDC88B-206ENST00000473405 MPZL3Q6UWV2 235 aa20.6■□□□□ 0.89
CCDC88B-206ENST00000473405 LRRC15Q8TF66 581 aa20.6■□□□□ 0.89
CCDC88B-206ENST00000473405 SPIRE2Q8WWL2 714 aa20.6■□□□□ 0.89
CCDC88B-206ENST00000473405 RSAD2Q8WXG1 361 aa20.6■□□□□ 0.89
CCDC88B-206ENST00000473405 PIDD1Q9HB75 910 aa20.6■□□□□ 0.89
CCDC88B-206ENST00000473405 IGSF9Q9P2J2 1179 aa20.6■□□□□ 0.89
CCDC88B-206ENST00000473405 MTRRQ9UBK8 725 aa20.6■□□□□ 0.89
CCDC88B-206ENST00000473405 NPHP3-ACAD11A0A0J9YXS1 232 aa20.59■□□□□ 0.89
CCDC88B-206ENST00000473405 I3L4J1 428 aa20.59■□□□□ 0.89
CCDC88B-206ENST00000473405 NARSO43776 548 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-206ENST00000473405 PLA2G4BP0C869 781 aa20.59■□□□□ 0.89
CCDC88B-206ENST00000473405 TKTP29401 623 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-206ENST00000473405 ARSHQ5FYA8 562 aa20.59■□□□□ 0.89
CCDC88B-206ENST00000473405 CWF19L1Q69YN2 538 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-206ENST00000473405 RSPO2Q6UXX9 243 aaPredicted RBP20.59■□□□□ 0.89
CCDC88B-206ENST00000473405 GET4Q7L5D6 327 aaPredicted RBP20.59■□□□□ 0.89
CCDC88B-206ENST00000473405 ZBTB45Q96K62 511 aaPredicted RBP20.59■□□□□ 0.89
CCDC88B-206ENST00000473405 KCND2Q9NZV8 630 aa20.59■□□□□ 0.89
CCDC88B-206ENST00000473405 CNTN3Q9P232 1028 aa20.59■□□□□ 0.89
CCDC88B-206ENST00000473405 TOM1L1O75674 476 aa20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 C8AP07357 584 aa20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 HNRNPA1P09651 372 aaKnown RBP eCLIP20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 KCNE1P15382 129 aa20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 HOXA9P31269 272 aa20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 OR1D2P34982 312 aa20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 BRCC3P46736 316 aa20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 NUBP1P53384 320 aa20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 CACNB1Q02641 598 aaPredicted RBP20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 RAB33AQ14088 237 aa20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 NOLC1Q14978 699 aaKnown RBP eCLIP20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 LIN9Q5TKA1 542 aa20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 LARP1BQ659C4 914 aaKnown RBP20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 ASTLQ6HA08 431 aaPredicted RBP20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 DDX27Q96GQ7 796 aaKnown RBP20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 TCHPQ9BT92 498 aa20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 ANKFY1Q9P2R3 1169 aa20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.58■□□□□ 0.89
CCDC88B-206ENST00000473405 GALR2O43603 387 aaPredicted RBP20.57■□□□□ 0.88
CCDC88B-206ENST00000473405 HARSP12081 509 aaKnown RBP20.57■□□□□ 0.88
CCDC88B-206ENST00000473405 LAMP2P13473 410 aa20.57■□□□□ 0.88
CCDC88B-206ENST00000473405 GRIN1Q05586 938 aa20.57■□□□□ 0.88
CCDC88B-206ENST00000473405 STRN3Q13033 797 aa20.57■□□□□ 0.88
CCDC88B-206ENST00000473405 SLC7A14Q8TBB6 771 aa20.57■□□□□ 0.88
CCDC88B-206ENST00000473405 C18orf25Q96B23 403 aaPredicted RBP20.57■□□□□ 0.88
CCDC88B-206ENST00000473405 CDK5RAP3Q96JB5 506 aa20.57■□□□□ 0.88
CCDC88B-206ENST00000473405 AK8Q96MA6 479 aa20.57■□□□□ 0.88
CCDC88B-206ENST00000473405 ACAP3Q96P50 834 aa20.57■□□□□ 0.88
CCDC88B-206ENST00000473405 HAPLN2Q9GZV7 340 aa20.57■□□□□ 0.88
CCDC88B-206ENST00000473405 SLC38A7Q9NVC3 462 aa20.57■□□□□ 0.88
CCDC88B-206ENST00000473405 CDY1Q9Y6F8 540 aa20.57■□□□□ 0.88
CCDC88B-206ENST00000473405 PODXLO00592 558 aa20.56■□□□□ 0.88
CCDC88B-206ENST00000473405 NPR3P17342 541 aa20.56■□□□□ 0.88
CCDC88B-206ENST00000473405 NCKAP1LP55160 1127 aa20.56■□□□□ 0.88
CCDC88B-206ENST00000473405 NTHL1P78549 312 aa20.56■□□□□ 0.88
CCDC88B-206ENST00000473405 SEZ6Q53EL9 994 aa20.56■□□□□ 0.88
CCDC88B-206ENST00000473405 PPM1LQ5SGD2 360 aa20.56■□□□□ 0.88
CCDC88B-206ENST00000473405 ZPBP2Q6X784 338 aa20.56■□□□□ 0.88
CCDC88B-206ENST00000473405 GRASPQ7Z6J2 395 aaPredicted RBP20.56■□□□□ 0.88
CCDC88B-206ENST00000473405 SLC44A3Q8N4M1 653 aa20.56■□□□□ 0.88
CCDC88B-206ENST00000473405 MFSD1Q9H3U5 465 aa20.56■□□□□ 0.88
CCDC88B-206ENST00000473405 FAM86C1Q9NVL1 165 aa20.56■□□□□ 0.88
CCDC88B-206ENST00000473405 BACE2Q9Y5Z0 518 aa20.56■□□□□ 0.88
CCDC88B-206ENST00000473405 SPTBN4Q9H254 2564 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 ANHXE9PGG2 379 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 CCL16O15467 120 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 SLC26A4O43511 780 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 TRAPPC3O43617 180 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 POU2F2P09086 479 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 FSHRP23945 695 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 CLCN5P51795 746 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 SMTNP53814 917 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 MCL1Q07820 350 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 HTR4Q13639 388 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 SLC10A6Q3KNW5 377 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 AXDND1Q5T1B0 1012 aaPredicted RBP20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 ANKS3Q6ZW76 656 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 BRAPQ7Z569 592 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 SIX5Q8N196 739 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 KCNN1Q92952 543 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 REEP2Q9BRK0 252 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 BLOC1S4Q9NUP1 217 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 ANK1P16157 1881 aa20.55■□□□□ 0.88
CCDC88B-206ENST00000473405 H0Y858 1186 aa20.54■□□□□ 0.88
CCDC88B-206ENST00000473405 CUL4AQ13619 759 aa20.54■□□□□ 0.88
CCDC88B-206ENST00000473405 SLC8B1Q6J4K2 584 aa20.54■□□□□ 0.88
CCDC88B-206ENST00000473405 GPBP1Q86WP2 473 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms