RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 TROVE2P10155 538 aaKnown RBP eCLIP8.18□□□□□ -1.1
USP54-210ENST00000466048 SESTD1Q86VW0 696 aa8.18□□□□□ -1.1
USP54-210ENST00000466048 ZNF354CQ86Y25 554 aa8.18□□□□□ -1.1
USP54-210ENST00000466048 APLFQ8IW19 511 aaPredicted RBP8.18□□□□□ -1.1
USP54-210ENST00000466048 SYCE1Q8N0S2 351 aa8.18□□□□□ -1.1
USP54-210ENST00000466048 TINF2Q9BSI4 451 aa8.18□□□□□ -1.1
USP54-210ENST00000466048 SNX25Q9H3E2 840 aa8.18□□□□□ -1.1
USP54-210ENST00000466048 NLRC4Q9NPP4 1024 aa8.18□□□□□ -1.1
USP54-210ENST00000466048 XPNPEP3Q9NQH7 507 aa8.18□□□□□ -1.1
USP54-210ENST00000466048 SLC38A7Q9NVC3 462 aa8.18□□□□□ -1.1
USP54-210ENST00000466048 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.18□□□□□ -1.1
USP54-210ENST00000466048 HMGB1P1B2RPK0 211 aaPredicted RBP8.18□□□□□ -1.1
USP54-210ENST00000466048 CLTAP09496 248 aa8.18□□□□□ -1.1
USP54-210ENST00000466048 SRGAP2CP0DJJ0 459 aa8.18□□□□□ -1.1
USP54-210ENST00000466048 STMN1P16949 149 aa8.18□□□□□ -1.1
USP54-210ENST00000466048 YBX3P16989 372 aaKnown RBP eCLIP8.18□□□□□ -1.1
USP54-210ENST00000466048 SEL1L2Q5TEA6 688 aa8.18□□□□□ -1.1
USP54-210ENST00000466048 ANKRD20A3Q5VUR7 823 aa8.18□□□□□ -1.1
USP54-210ENST00000466048 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.18□□□□□ -1.1
USP54-210ENST00000466048 GFM2Q969S9 779 aaKnown RBP8.18□□□□□ -1.1
USP54-210ENST00000466048 ZNF560Q96MR9 790 aa8.18□□□□□ -1.1
USP54-210ENST00000466048 NT5C1BQ96P26 610 aa8.18□□□□□ -1.1
USP54-210ENST00000466048 TUBB6Q9BUF5 446 aa8.18□□□□□ -1.1
USP54-210ENST00000466048 SFI1A8K8P3 1242 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 CLIC2O15247 247 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 CD19P15391 556 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 ALDH5A1P51649 535 aaPredicted RBP8.17□□□□□ -1.1
USP54-210ENST00000466048 GTF2BQ00403 316 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 KLHDC7AQ5VTJ3 777 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 NUF2Q9BZD4 464 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 EHD2Q9NZN4 543 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 CTTNBP2NLQ9P2B4 639 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 DPP7Q9UHL4 492 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 TPX2Q9ULW0 747 aaKnown RBP8.17□□□□□ -1.1
USP54-210ENST00000466048 RGS16O15492 202 aaPredicted RBP8.17□□□□□ -1.1
USP54-210ENST00000466048 EFCAB14O75071 495 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 GTF2H1P32780 548 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 HIRAP54198 1017 aaPredicted RBP8.17□□□□□ -1.1
USP54-210ENST00000466048 NCKAP1LP55160 1127 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 ACVR2BQ13705 512 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 CCDC92Q53HC0 331 aaPredicted RBP8.17□□□□□ -1.1
USP54-210ENST00000466048 CYP4F22Q6NT55 531 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 WDR59Q6PJI9 974 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 ELMOD1Q8N336 334 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 GLIS3Q8NEA6 775 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 HHIPL1Q96JK4 782 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 WDR24Q96S15 920 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 MSTO1Q9BUK6 570 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 SUFUQ9UMX1 484 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 CCDC85CA6NKD9 419 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 PJA2O43164 708 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 LMNAP02545 664 aaKnown RBP8.17□□□□□ -1.1
USP54-210ENST00000466048 FMO5P49326 533 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 CASP5P51878 434 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 ACTR2P61160 394 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 BFSP1Q12934 665 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 DENND2CQ68D51 928 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.17□□□□□ -1.1
USP54-210ENST00000466048 BAP1Q92560 729 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 INTUQ9ULD6 942 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 IGSF9BQ9UPX0 1349 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 MED7O43513 233 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 RPS6KA5O75582 802 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 AKAP3O75969 853 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 KCNA2P16389 499 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 CTNNA1P35221 906 aaKnown RBP8.17□□□□□ -1.1
USP54-210ENST00000466048 KLK7P49862 253 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 MFAP3P55082 362 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 PEX3P56589 373 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 IFT88Q13099 833 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 PCBP1Q15365 356 aaKnown RBP eCLIP8.17□□□□□ -1.1
USP54-210ENST00000466048 GPR142Q7Z601 462 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 DMAC2Q9NW81 257 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 SUCLA2Q9P2R7 463 aaPredicted RBP8.17□□□□□ -1.1
USP54-210ENST00000466048 TLL2Q9Y6L7 1015 aa8.17□□□□□ -1.1
USP54-210ENST00000466048 BTBD19C9JJ37 291 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 RBAK-RBAKDNI3L0D1 243 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 TLR2O60603 784 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 OATP04181 439 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 UCHL3P15374 230 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 GRK4P32298 578 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 PSMD7P51665 324 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 SLC18A3Q16572 532 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 GLB1LQ6UWU2 654 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 CD302Q8IX05 232 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 WHAMMQ8TF30 809 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 MAIP1Q8WWC4 291 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 SLC35C1Q96A29 364 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 STK33Q9BYT3 514 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 POLR3FQ9H1D9 316 aaPredicted RBP8.16□□□□□ -1.1
USP54-210ENST00000466048 UBN1Q9NPG3 1134 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 PMM2O15305 246 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 TGFB1I1O43294 461 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 PON1P27169 355 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 VAMP7P51809 220 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 KCNMA1Q12791 1236 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 ZNF568Q3ZCX4 644 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 SMYD5Q6GMV2 418 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 MED10Q9BTT4 135 aa8.16□□□□□ -1.1
USP54-210ENST00000466048 DDX23Q9BUQ8 820 aaKnown RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms