RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 FBXW11Q9UKB1 542 aa15.27■□□□□ 0.04
USP4-206ENST00000461553 CACNA1HO95180 2353 aa15.26■□□□□ 0.03
USP4-206ENST00000461553 NPHP3-ACAD11A0A0J9YXS1 232 aa15.26■□□□□ 0.03
USP4-206ENST00000461553 SMIM28A0A1B0GU29 152 aa15.26■□□□□ 0.03
USP4-206ENST00000461553 ABLIM1O14639 778 aa15.26■□□□□ 0.03
USP4-206ENST00000461553 TRAPPC3O43617 180 aa15.26■□□□□ 0.03
USP4-206ENST00000461553 TBCAO75347 108 aaKnown RBP15.26■□□□□ 0.03
USP4-206ENST00000461553 PLCG1P19174 1290 aa15.26■□□□□ 0.03
USP4-206ENST00000461553 GBP2P32456 591 aaPredicted RBP15.26■□□□□ 0.03
USP4-206ENST00000461553 NCKAP1LP55160 1127 aa15.26■□□□□ 0.03
USP4-206ENST00000461553 DHX8Q14562 1220 aaKnown RBP15.26■□□□□ 0.03
USP4-206ENST00000461553 KARSQ15046 597 aaKnown RBP15.26■□□□□ 0.03
USP4-206ENST00000461553 UPP1Q16831 310 aa15.26■□□□□ 0.03
USP4-206ENST00000461553 DCLRE1AQ6PJP8 1040 aa15.26■□□□□ 0.03
USP4-206ENST00000461553 ZPBP2Q6X784 338 aa15.26■□□□□ 0.03
USP4-206ENST00000461553 LNX1Q8TBB1 728 aaPredicted RBP15.26■□□□□ 0.03
USP4-206ENST00000461553 REEP2Q9BRK0 252 aa15.26■□□□□ 0.03
USP4-206ENST00000461553 NTPCRQ9BSD7 190 aaKnown RBP15.26■□□□□ 0.03
USP4-206ENST00000461553 CNTN3Q9P232 1028 aa15.26■□□□□ 0.03
USP4-206ENST00000461553 TSC2P49815 1807 aa15.25■□□□□ 0.03
USP4-206ENST00000461553 PODXLO00592 558 aa15.25■□□□□ 0.03
USP4-206ENST00000461553 HNRNPDLO14979 420 aaKnown RBP15.25■□□□□ 0.03
USP4-206ENST00000461553 CLDN3O15551 220 aa15.25■□□□□ 0.03
USP4-206ENST00000461553 ZMYND10O75800 440 aa15.25■□□□□ 0.03
USP4-206ENST00000461553 SCP2P22307 547 aa15.25■□□□□ 0.03
USP4-206ENST00000461553 GRIN1Q05586 938 aa15.25■□□□□ 0.03
USP4-206ENST00000461553 SOX4Q06945 474 aaPredicted RBP15.25■□□□□ 0.03
USP4-206ENST00000461553 XKR4Q5GH76 650 aa15.25■□□□□ 0.03
USP4-206ENST00000461553 GET4Q7L5D6 327 aaPredicted RBP15.25■□□□□ 0.03
USP4-206ENST00000461553 LARP4BQ92615 738 aaKnown RBP15.25■□□□□ 0.03
USP4-206ENST00000461553 RAD54LQ92698 747 aa15.25■□□□□ 0.03
USP4-206ENST00000461553 ZNF707Q96C28 371 aaPredicted RBP15.25■□□□□ 0.03
USP4-206ENST00000461553 DDX27Q96GQ7 796 aaKnown RBP15.25■□□□□ 0.03
USP4-206ENST00000461553 PRRX2Q99811 253 aa15.25■□□□□ 0.03
USP4-206ENST00000461553 CLSTN3Q9BQT9 956 aa15.25■□□□□ 0.03
USP4-206ENST00000461553 PRKD2Q9BZL6 878 aa15.25■□□□□ 0.03
USP4-206ENST00000461553 PARVGQ9HBI0 331 aa15.25■□□□□ 0.03
USP4-206ENST00000461553 PAPLNO95428 1278 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 C8AP07357 584 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 KCNE1P15382 129 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 FGFR3P22607 806 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 TKTP29401 623 aaKnown RBP15.24■□□□□ 0.03
USP4-206ENST00000461553 TXLNAP40222 546 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 LIG4P49917 911 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 MCM6Q14566 821 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 ARSHQ5FYA8 562 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 PPM1LQ5SGD2 360 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 LILRA6Q6PI73 481 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 ALKAL1Q6UXT8 129 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 ANKS3Q6ZW76 656 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 HAUS6Q7Z4H7 955 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 MYCT1Q8N699 235 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 C3orf58Q8NDZ4 430 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 INTS4Q96HW7 963 aaKnown RBP15.24■□□□□ 0.03
USP4-206ENST00000461553 ZBTB45Q96K62 511 aaPredicted RBP15.24■□□□□ 0.03
USP4-206ENST00000461553 BACH2Q9BYV9 841 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 SMOC2Q9H3U7 446 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 ZHX3Q9H4I2 956 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 BLOC1S4Q9NUP1 217 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 MTRRQ9UBK8 725 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 NUB1Q9Y5A7 615 aa15.24■□□□□ 0.03
USP4-206ENST00000461553 NOTCH4Q99466 2003 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 I3L4J1 428 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 K7ELQ4 463 aaPredicted RBP15.23■□□□□ 0.03
USP4-206ENST00000461553 HNRNPA1P09651 372 aaKnown RBP eCLIP15.23■□□□□ 0.03
USP4-206ENST00000461553 CXCL8P10145 99 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 SYT1P21579 422 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 HOXA9P31269 272 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 ABCD1P33897 745 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 BRCC3P46736 316 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 ZNF131P52739 623 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 MCL1Q07820 350 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 RESTQ13127 1097 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 TDGQ13569 410 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 LRRC15Q8TF66 581 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 KCNN1Q92952 543 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 ZMAT2Q96NC0 199 aaKnown RBP15.23■□□□□ 0.03
USP4-206ENST00000461553 CCSER1Q9C0I3 900 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 MFSD1Q9H3U5 465 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 IGSF9Q9P2J2 1179 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 CCDC39Q9UFE4 941 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 DUSP12Q9UNI6 340 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.23■□□□□ 0.03
USP4-206ENST00000461553 CLIC4Q9Y696 253 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 CDY1Q9Y6F8 540 aa15.23■□□□□ 0.03
USP4-206ENST00000461553 SYN3O14994 580 aa15.22■□□□□ 0.03
USP4-206ENST00000461553 ADAM12O43184 909 aa15.22■□□□□ 0.03
USP4-206ENST00000461553 TRAK2O60296 914 aa15.22■□□□□ 0.03
USP4-206ENST00000461553 N4BP1O75113 896 aaKnown RBP15.22■□□□□ 0.03
USP4-206ENST00000461553 XYLBO75191 536 aa15.22■□□□□ 0.03
USP4-206ENST00000461553 PDGFBP01127 241 aaPredicted RBP15.22■□□□□ 0.03
USP4-206ENST00000461553 MARCKSP29966 332 aaPredicted RBP15.22■□□□□ 0.03
USP4-206ENST00000461553 RPL9P32969 192 aaKnown RBP15.22■□□□□ 0.03
USP4-206ENST00000461553 MCM4P33991 863 aa15.22■□□□□ 0.03
USP4-206ENST00000461553 OR1D2P34982 312 aa15.22■□□□□ 0.03
USP4-206ENST00000461553 VCPP55072 806 aaKnown RBP15.22■□□□□ 0.03
USP4-206ENST00000461553 NHLH1Q02575 133 aa15.22■□□□□ 0.03
USP4-206ENST00000461553 PPP2R3AQ06190 1150 aa15.22■□□□□ 0.03
USP4-206ENST00000461553 RAB33AQ14088 237 aa15.22■□□□□ 0.03
USP4-206ENST00000461553 KYAT1Q16773 422 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms