RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 PDXDC1Q6P996 788 aa23.2■■□□□ 1.3
HMGB3-205ENST00000455596 C15orf39Q6ZRI6 1047 aa23.2■■□□□ 1.3
HMGB3-205ENST00000455596 PALB2Q86YC2 1186 aa23.2■■□□□ 1.3
HMGB3-205ENST00000455596 HDAC7Q8WUI4 952 aa23.2■■□□□ 1.3
HMGB3-205ENST00000455596 PIK3R5Q8WYR1 880 aa23.2■■□□□ 1.3
HMGB3-205ENST00000455596 DDX27Q96GQ7 796 aaKnown RBP23.2■■□□□ 1.3
HMGB3-205ENST00000455596 CNTN3Q9P232 1028 aa23.2■■□□□ 1.3
HMGB3-205ENST00000455596 TBX20Q9UMR3 447 aa23.2■■□□□ 1.3
HMGB3-205ENST00000455596 ANK1P16157 1881 aa23.19■■□□□ 1.3
HMGB3-205ENST00000455596 KCNE1P15382 129 aa23.19■■□□□ 1.3
HMGB3-205ENST00000455596 STK38Q15208 465 aa23.19■■□□□ 1.3
HMGB3-205ENST00000455596 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.19■■□□□ 1.3
HMGB3-205ENST00000455596 CMASQ8NFW8 434 aaPredicted RBP23.19■■□□□ 1.3
HMGB3-205ENST00000455596 EDAQ92838 391 aa23.19■■□□□ 1.3
HMGB3-205ENST00000455596 ZNF396Q96N95 335 aaPredicted RBP23.19■■□□□ 1.3
HMGB3-205ENST00000455596 ZMAT2Q96NC0 199 aaKnown RBP23.19■■□□□ 1.3
HMGB3-205ENST00000455596 PLEKHA4Q9H4M7 779 aa23.19■■□□□ 1.3
HMGB3-205ENST00000455596 CCDC195A0A1B0GUA6 201 aa23.18■■□□□ 1.3
HMGB3-205ENST00000455596 C2CD4DB7Z1M9 353 aa23.18■■□□□ 1.3
HMGB3-205ENST00000455596 HNRNPDLO14979 420 aaKnown RBP23.18■■□□□ 1.3
HMGB3-205ENST00000455596 TGM5O43548 720 aa23.18■■□□□ 1.3
HMGB3-205ENST00000455596 TRAPPC3O43617 180 aa23.18■■□□□ 1.3
HMGB3-205ENST00000455596 SOX4Q06945 474 aaPredicted RBP23.18■■□□□ 1.3
HMGB3-205ENST00000455596 PSMD5Q16401 504 aa23.18■■□□□ 1.3
HMGB3-205ENST00000455596 SLC10A6Q3KNW5 377 aa23.18■■□□□ 1.3
HMGB3-205ENST00000455596 SEZ6Q53EL9 994 aa23.18■■□□□ 1.3
HMGB3-205ENST00000455596 CCDC73Q6ZRK6 1079 aa23.18■■□□□ 1.3
HMGB3-205ENST00000455596 DYMQ7RTS9 669 aa23.18■■□□□ 1.3
HMGB3-205ENST00000455596 LNX1Q8TBB1 728 aaPredicted RBP23.18■■□□□ 1.3
HMGB3-205ENST00000455596 FEZF2Q8TBJ5 459 aa23.18■■□□□ 1.3
HMGB3-205ENST00000455596 HAPLN2Q9GZV7 340 aa23.18■■□□□ 1.3
HMGB3-205ENST00000455596 PIGRP01833 764 aa23.17■■□□□ 1.3
HMGB3-205ENST00000455596 SPATA31D3P0C874 917 aa23.17■■□□□ 1.3
HMGB3-205ENST00000455596 MYBP10242 640 aa23.17■■□□□ 1.3
HMGB3-205ENST00000455596 FGFR3P22607 806 aa23.17■■□□□ 1.3
HMGB3-205ENST00000455596 NMT1P30419 496 aaKnown RBP23.17■■□□□ 1.3
HMGB3-205ENST00000455596 KYAT1Q16773 422 aa23.17■■□□□ 1.3
HMGB3-205ENST00000455596 LILRA6Q6PI73 481 aa23.17■■□□□ 1.3
HMGB3-205ENST00000455596 CYP26C1Q6V0L0 522 aa23.17■■□□□ 1.3
HMGB3-205ENST00000455596 SPATA31D4Q6ZUB0 917 aa23.17■■□□□ 1.3
HMGB3-205ENST00000455596 SV2BQ7L1I2 683 aa23.17■■□□□ 1.3
HMGB3-205ENST00000455596 TDRD5Q8NAT2 981 aaKnown RBP23.17■■□□□ 1.3
HMGB3-205ENST00000455596 LINC00301Q8NCQ3 95 aa23.17■■□□□ 1.3
HMGB3-205ENST00000455596 C3orf58Q8NDZ4 430 aa23.17■■□□□ 1.3
HMGB3-205ENST00000455596 FIZ1Q96SL8 496 aa23.17■■□□□ 1.3
HMGB3-205ENST00000455596 PLEKHA5Q9HAU0 1116 aa23.17■■□□□ 1.3
HMGB3-205ENST00000455596 USTQ9Y2C2 406 aa23.17■■□□□ 1.3
HMGB3-205ENST00000455596 PODXLO00592 558 aa23.16■■□□□ 1.3
HMGB3-205ENST00000455596 MEFVO15553 781 aaPredicted RBP23.16■■□□□ 1.3
HMGB3-205ENST00000455596 STAT6P42226 847 aa23.16■■□□□ 1.3
HMGB3-205ENST00000455596 ZXDAP98168 799 aa23.16■■□□□ 1.3
HMGB3-205ENST00000455596 GTF2BQ00403 316 aa23.16■■□□□ 1.3
HMGB3-205ENST00000455596 PTPN21Q16825 1174 aa23.16■■□□□ 1.3
HMGB3-205ENST00000455596 CD300LGQ6UXG3 332 aa23.16■■□□□ 1.3
HMGB3-205ENST00000455596 CCDC149Q6ZUS6 474 aa23.16■■□□□ 1.3
HMGB3-205ENST00000455596 PLCD3Q8N3E9 789 aa23.16■■□□□ 1.3
HMGB3-205ENST00000455596 DDX12PQ92771 950 aa23.16■■□□□ 1.3
HMGB3-205ENST00000455596 CLSTN3Q9BQT9 956 aa23.16■■□□□ 1.3
HMGB3-205ENST00000455596 RHOBTB2Q9BYZ6 727 aa23.16■■□□□ 1.3
HMGB3-205ENST00000455596 RAPGEFL1Q9UHV5 662 aa23.16■■□□□ 1.3
HMGB3-205ENST00000455596 SPTLC2O15270 562 aa23.15■■□□□ 1.3
HMGB3-205ENST00000455596 PPP6R2O75170 966 aa23.15■■□□□ 1.3
HMGB3-205ENST00000455596 CLTAP09496 248 aa23.15■■□□□ 1.3
HMGB3-205ENST00000455596 CXCL8P10145 99 aa23.15■■□□□ 1.3
HMGB3-205ENST00000455596 IGFBP6P24592 240 aaPredicted RBP23.15■■□□□ 1.3
HMGB3-205ENST00000455596 RPL9P32969 192 aaKnown RBP23.15■■□□□ 1.3
HMGB3-205ENST00000455596 BRCC3P46736 316 aa23.15■■□□□ 1.3
HMGB3-205ENST00000455596 FOXD4L5Q5VV16 416 aaPredicted RBP23.15■■□□□ 1.3
HMGB3-205ENST00000455596 SFR1Q86XK3 245 aa23.15■■□□□ 1.3
HMGB3-205ENST00000455596 MAP4K3Q8IVH8 894 aa23.15■■□□□ 1.3
HMGB3-205ENST00000455596 ZDHHC14Q8IZN3 488 aa23.15■■□□□ 1.3
HMGB3-205ENST00000455596 KREMEN2Q8NCW0 462 aa23.15■■□□□ 1.3
HMGB3-205ENST00000455596 FOXD4L4Q8WXT5 416 aaPredicted RBP23.15■■□□□ 1.3
HMGB3-205ENST00000455596 C18orf25Q96B23 403 aaPredicted RBP23.15■■□□□ 1.3
HMGB3-205ENST00000455596 ST6GALNAC4Q9H4F1 302 aa23.15■■□□□ 1.3
HMGB3-205ENST00000455596 ZDHHC7Q9NXF8 308 aa23.15■■□□□ 1.3
HMGB3-205ENST00000455596 TFIP11Q9UBB9 837 aaKnown RBP23.15■■□□□ 1.3
HMGB3-205ENST00000455596 HCN4Q9Y3Q4 1203 aa23.15■■□□□ 1.3
HMGB3-205ENST00000455596 MYMKA6NI61 221 aa23.14■■□□□ 1.29
HMGB3-205ENST00000455596 OGTO15294 1046 aa23.14■■□□□ 1.29
HMGB3-205ENST00000455596 RFPL2O75678 378 aa23.14■■□□□ 1.29
HMGB3-205ENST00000455596 ZSCAN22P10073 491 aaPredicted RBP23.14■■□□□ 1.29
HMGB3-205ENST00000455596 SMG7Q92540 1137 aaKnown RBP23.14■■□□□ 1.29
HMGB3-205ENST00000455596 ACSF2Q96CM8 615 aaPredicted RBP23.14■■□□□ 1.29
HMGB3-205ENST00000455596 PANK2Q9BZ23 570 aa23.14■■□□□ 1.29
HMGB3-205ENST00000455596 SEL1LQ9UBV2 794 aa23.14■■□□□ 1.29
HMGB3-205ENST00000455596 FBXW11Q9UKB1 542 aa23.14■■□□□ 1.29
HMGB3-205ENST00000455596 TECTAO75443 2155 aa23.14■■□□□ 1.29
HMGB3-205ENST00000455596 TTC26A0AVF1 554 aa23.13■■□□□ 1.29
HMGB3-205ENST00000455596 I3L4J1 428 aa23.13■■□□□ 1.29
HMGB3-205ENST00000455596 PAPLNO95428 1278 aa23.13■■□□□ 1.29
HMGB3-205ENST00000455596 YEATS4O95619 227 aa23.13■■□□□ 1.29
HMGB3-205ENST00000455596 TKTP29401 623 aaKnown RBP23.13■■□□□ 1.29
HMGB3-205ENST00000455596 TNFSF9P41273 254 aa23.13■■□□□ 1.29
HMGB3-205ENST00000455596 PPP2R3AQ06190 1150 aa23.13■■□□□ 1.29
HMGB3-205ENST00000455596 ZC2HC1CQ53FD0 456 aaPredicted RBP23.13■■□□□ 1.29
HMGB3-205ENST00000455596 TRIM67Q6ZTA4 783 aa23.13■■□□□ 1.29
HMGB3-205ENST00000455596 ANKS3Q6ZW76 656 aa23.13■■□□□ 1.29
HMGB3-205ENST00000455596 OTOP3Q7RTS5 596 aa23.13■■□□□ 1.29
HMGB3-205ENST00000455596 PIDD1Q9HB75 910 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms