RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 YARSP54577 528 aaKnown RBP13.66□□□□□ -0.22
CPSF4-208ENST00000452047 RESTQ13127 1097 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 NOLC1Q14978 699 aaKnown RBP eCLIP13.66□□□□□ -0.22
CPSF4-208ENST00000452047 KARSQ15046 597 aaKnown RBP13.66□□□□□ -0.22
CPSF4-208ENST00000452047 DCLRE1AQ6PJP8 1040 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 ZPBP2Q6X784 338 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.66□□□□□ -0.22
CPSF4-208ENST00000452047 OTOP3Q7RTS5 596 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 GPBP1Q86WP2 473 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 CEP57Q86XR8 500 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 UBALD2Q8IYN6 164 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 INTS4Q96HW7 963 aaKnown RBP13.66□□□□□ -0.22
CPSF4-208ENST00000452047 ACAP3Q96P50 834 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 HAPLN2Q9GZV7 340 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 KCNH6Q9H252 994 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 SMOC2Q9H3U7 446 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 WDR6Q9NNW5 1121 aaKnown RBP13.66□□□□□ -0.22
CPSF4-208ENST00000452047 ZDHHC7Q9NXF8 308 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 LARSQ9P2J5 1176 aaKnown RBP13.66□□□□□ -0.22
CPSF4-208ENST00000452047 ANKFY1Q9P2R3 1169 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 LIMD1Q9UGP4 676 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 FBXW11Q9UKB1 542 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 CLIC4Q9Y696 253 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 DOCK6Q96HP0 2047 aa13.66□□□□□ -0.22
CPSF4-208ENST00000452047 CLUHO75153 1309 aa13.65□□□□□ -0.22
CPSF4-208ENST00000452047 ADAM12O43184 909 aa13.65□□□□□ -0.22
CPSF4-208ENST00000452047 HARSP12081 509 aaKnown RBP13.65□□□□□ -0.22
CPSF4-208ENST00000452047 MCL1Q07820 350 aa13.65□□□□□ -0.22
CPSF4-208ENST00000452047 MCM6Q14566 821 aa13.65□□□□□ -0.22
CPSF4-208ENST00000452047 PDXDC1Q6P996 788 aa13.65□□□□□ -0.22
CPSF4-208ENST00000452047 USP49Q70CQ1 688 aa13.65□□□□□ -0.22
CPSF4-208ENST00000452047 FBXL6Q8N531 539 aa13.65□□□□□ -0.22
CPSF4-208ENST00000452047 SMG7Q92540 1137 aaKnown RBP13.65□□□□□ -0.22
CPSF4-208ENST00000452047 RAD54LQ92698 747 aa13.65□□□□□ -0.22
CPSF4-208ENST00000452047 ACSF2Q96CM8 615 aaPredicted RBP13.65□□□□□ -0.22
CPSF4-208ENST00000452047 TCHPQ9BT92 498 aa13.65□□□□□ -0.22
CPSF4-208ENST00000452047 CCSER1Q9C0I3 900 aa13.65□□□□□ -0.22
CPSF4-208ENST00000452047 SLC38A7Q9NVC3 462 aa13.65□□□□□ -0.22
CPSF4-208ENST00000452047 MTRRQ9UBK8 725 aa13.65□□□□□ -0.22
CPSF4-208ENST00000452047 GTF3C3Q9Y5Q9 886 aa13.65□□□□□ -0.22
CPSF4-208ENST00000452047 PIEZO1Q92508 2521 aa13.65□□□□□ -0.22
CPSF4-208ENST00000452047 VPS13AQ96RL7 3174 aa13.65□□□□□ -0.23
CPSF4-208ENST00000452047 H0YCG3 227 aa13.64□□□□□ -0.23
CPSF4-208ENST00000452047 ZMYND10O75800 440 aa13.64□□□□□ -0.23
CPSF4-208ENST00000452047 TKTP29401 623 aaKnown RBP13.64□□□□□ -0.23
CPSF4-208ENST00000452047 BRCC3P46736 316 aa13.64□□□□□ -0.23
CPSF4-208ENST00000452047 DHX8Q14562 1220 aaKnown RBP13.64□□□□□ -0.23
CPSF4-208ENST00000452047 SLC10A6Q3KNW5 377 aa13.64□□□□□ -0.23
CPSF4-208ENST00000452047 SEZ6Q53EL9 994 aa13.64□□□□□ -0.23
CPSF4-208ENST00000452047 FAM173BQ6P4H8 233 aa13.64□□□□□ -0.23
CPSF4-208ENST00000452047 HAUS6Q7Z4H7 955 aa13.64□□□□□ -0.23
CPSF4-208ENST00000452047 LARP4BQ92615 738 aaKnown RBP13.64□□□□□ -0.23
CPSF4-208ENST00000452047 C18orf25Q96B23 403 aaPredicted RBP13.64□□□□□ -0.23
CPSF4-208ENST00000452047 DDX27Q96GQ7 796 aaKnown RBP13.64□□□□□ -0.23
CPSF4-208ENST00000452047 EPSTI1Q96J88 318 aa13.64□□□□□ -0.23
CPSF4-208ENST00000452047 FIZ1Q96SL8 496 aa13.64□□□□□ -0.23
CPSF4-208ENST00000452047 PRKD2Q9BZL6 878 aa13.64□□□□□ -0.23
CPSF4-208ENST00000452047 PARVGQ9HBI0 331 aa13.64□□□□□ -0.23
CPSF4-208ENST00000452047 FBXO2Q9UK22 296 aaPredicted RBP13.64□□□□□ -0.23
CPSF4-208ENST00000452047 DMDP11532 3685 aa13.63□□□□□ -0.23
CPSF4-208ENST00000452047 I3L4J1 428 aa13.63□□□□□ -0.23
CPSF4-208ENST00000452047 K7ELQ4 463 aaPredicted RBP13.63□□□□□ -0.23
CPSF4-208ENST00000452047 PODXLO00592 558 aa13.63□□□□□ -0.23
CPSF4-208ENST00000452047 CLDN3O15551 220 aa13.63□□□□□ -0.23
CPSF4-208ENST00000452047 FAM189A1O60320 539 aa13.63□□□□□ -0.23
CPSF4-208ENST00000452047 PDGFBP01127 241 aaPredicted RBP13.63□□□□□ -0.23
CPSF4-208ENST00000452047 PIGRP01833 764 aa13.63□□□□□ -0.23
CPSF4-208ENST00000452047 SCP2P22307 547 aa13.63□□□□□ -0.23
CPSF4-208ENST00000452047 MARCKSP29966 332 aaPredicted RBP13.63□□□□□ -0.23
CPSF4-208ENST00000452047 RAB33AQ14088 237 aa13.63□□□□□ -0.23
CPSF4-208ENST00000452047 SPECC1Q5M775 1068 aa13.63□□□□□ -0.23
CPSF4-208ENST00000452047 RSPO2Q6UXX9 243 aaPredicted RBP13.63□□□□□ -0.23
CPSF4-208ENST00000452047 SUGP1Q8IWZ8 645 aaKnown RBP13.63□□□□□ -0.23
CPSF4-208ENST00000452047 RASSF8Q8NHQ8 419 aa13.63□□□□□ -0.23
CPSF4-208ENST00000452047 STAMQ92783 540 aa13.63□□□□□ -0.23
CPSF4-208ENST00000452047 KCNK12Q9HB15 430 aa13.63□□□□□ -0.23
CPSF4-208ENST00000452047 TBX20Q9UMR3 447 aa13.63□□□□□ -0.23
CPSF4-208ENST00000452047 MTMR6Q9Y217 621 aa13.63□□□□□ -0.23
CPSF4-208ENST00000452047 SRPRBQ9Y5M8 271 aaKnown RBP13.63□□□□□ -0.23
CPSF4-208ENST00000452047 MORC2Q9Y6X9 1032 aaPredicted RBP13.63□□□□□ -0.23
CPSF4-208ENST00000452047 ANK1P16157 1881 aa13.63□□□□□ -0.23
CPSF4-208ENST00000452047 NOTCH4Q99466 2003 aa13.63□□□□□ -0.23
CPSF4-208ENST00000452047 TTC26A0AVF1 554 aa13.62□□□□□ -0.23
CPSF4-208ENST00000452047 K7ENM7 598 aa13.62□□□□□ -0.23
CPSF4-208ENST00000452047 HNRNPDLO14979 420 aaKnown RBP13.62□□□□□ -0.23
CPSF4-208ENST00000452047 TRAPPC3O43617 180 aa13.62□□□□□ -0.23
CPSF4-208ENST00000452047 FAM13AO94988 1023 aa13.62□□□□□ -0.23
CPSF4-208ENST00000452047 C8AP07357 584 aa13.62□□□□□ -0.23
CPSF4-208ENST00000452047 HNRNPA1P09651 372 aaKnown RBP eCLIP13.62□□□□□ -0.23
CPSF4-208ENST00000452047 CXCL8P10145 99 aa13.62□□□□□ -0.23
CPSF4-208ENST00000452047 HOXA9P31269 272 aa13.62□□□□□ -0.23
CPSF4-208ENST00000452047 HOXD11P31277 338 aaPredicted RBP13.62□□□□□ -0.23
CPSF4-208ENST00000452047 RPL9P32969 192 aaKnown RBP13.62□□□□□ -0.23
CPSF4-208ENST00000452047 OR1D2P34982 312 aa13.62□□□□□ -0.23
CPSF4-208ENST00000452047 DDIT3P35638 169 aa13.62□□□□□ -0.23
CPSF4-208ENST00000452047 VCPP55072 806 aaKnown RBP13.62□□□□□ -0.23
CPSF4-208ENST00000452047 IER5LQ5T953 404 aa13.62□□□□□ -0.23
CPSF4-208ENST00000452047 ANKS3Q6ZW76 656 aa13.62□□□□□ -0.23
CPSF4-208ENST00000452047 MYCT1Q8N699 235 aa13.62□□□□□ -0.23
CPSF4-208ENST00000452047 BICD1Q96G01 975 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms