RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 DNM3Q9UQ16 869 aa15.93■□□□□ 0.14
SDC1-204ENST00000429035 TNFSF13BQ9Y275 285 aa15.93■□□□□ 0.14
SDC1-204ENST00000429035 STK24Q9Y6E0 443 aa15.93■□□□□ 0.14
SDC1-204ENST00000429035 MYO15AQ9UKN7 3530 aa15.93■□□□□ 0.14
SDC1-204ENST00000429035 COL4A3Q01955 1670 aa15.92■□□□□ 0.14
SDC1-204ENST00000429035 NOTCH4Q99466 2003 aa15.92■□□□□ 0.14
SDC1-204ENST00000429035 TMEM189-UBE2V1I3L0A0 370 aa15.92■□□□□ 0.14
SDC1-204ENST00000429035 CDC25AP30304 524 aa15.92■□□□□ 0.14
SDC1-204ENST00000429035 NPTX2P47972 431 aa15.92■□□□□ 0.14
SDC1-204ENST00000429035 ARPP19P56211 112 aa15.92■□□□□ 0.14
SDC1-204ENST00000429035 RAD51AP2Q09MP3 1159 aa15.92■□□□□ 0.14
SDC1-204ENST00000429035 DCLRE1AQ6PJP8 1040 aa15.92■□□□□ 0.14
SDC1-204ENST00000429035 PARM1Q6UWI2 310 aa15.92■□□□□ 0.14
SDC1-204ENST00000429035 C4orf32Q8N8J7 132 aa15.92■□□□□ 0.14
SDC1-204ENST00000429035 C3orf58Q8NDZ4 430 aa15.92■□□□□ 0.14
SDC1-204ENST00000429035 ITFG1Q8TB96 612 aa15.92■□□□□ 0.14
SDC1-204ENST00000429035 FGF14Q92915 247 aa15.92■□□□□ 0.14
SDC1-204ENST00000429035 DDX27Q96GQ7 796 aaKnown RBP15.92■□□□□ 0.14
SDC1-204ENST00000429035 DRC1Q96MC2 740 aa15.92■□□□□ 0.14
SDC1-204ENST00000429035 UROC1Q96N76 676 aa15.92■□□□□ 0.14
SDC1-204ENST00000429035 TARS2Q9BW92 718 aaKnown RBP15.92■□□□□ 0.14
SDC1-204ENST00000429035 FOXQ1Q9C009 403 aa15.92■□□□□ 0.14
SDC1-204ENST00000429035 PODXLO00592 558 aa15.91■□□□□ 0.14
SDC1-204ENST00000429035 SLC16A4O15374 487 aa15.91■□□□□ 0.14
SDC1-204ENST00000429035 TRAPPC3O43617 180 aa15.91■□□□□ 0.14
SDC1-204ENST00000429035 FGFR3P22607 806 aa15.91■□□□□ 0.14
SDC1-204ENST00000429035 HOXA9P31269 272 aa15.91■□□□□ 0.14
SDC1-204ENST00000429035 GRM5P41594 1212 aa15.91■□□□□ 0.14
SDC1-204ENST00000429035 MATR3P43243 847 aaKnown RBP eCLIP15.91■□□□□ 0.14
SDC1-204ENST00000429035 TOB1P50616 345 aaPredicted RBP15.91■□□□□ 0.14
SDC1-204ENST00000429035 SOX4Q06945 474 aaPredicted RBP15.91■□□□□ 0.14
SDC1-204ENST00000429035 PABPC1LQ4VXU2 614 aaKnown RBP15.91■□□□□ 0.14
SDC1-204ENST00000429035 DTHD1Q6ZMT9 781 aa15.91■□□□□ 0.14
SDC1-204ENST00000429035 ANKS3Q6ZW76 656 aa15.91■□□□□ 0.14
SDC1-204ENST00000429035 MTSS1LQ765P7 747 aa15.91■□□□□ 0.14
SDC1-204ENST00000429035 IGSF22Q8N9C0 903 aa15.91■□□□□ 0.14
SDC1-204ENST00000429035 KCNG4Q8TDN1 519 aa15.91■□□□□ 0.14
SDC1-204ENST00000429035 FGF13Q92913 245 aa15.91■□□□□ 0.14
SDC1-204ENST00000429035 PLIN2Q99541 437 aa15.91■□□□□ 0.14
SDC1-204ENST00000429035 ACO2Q99798 780 aaKnown RBP15.91■□□□□ 0.14
SDC1-204ENST00000429035 KXD1Q9BQD3 176 aa15.91■□□□□ 0.14
SDC1-204ENST00000429035 RPP25Q9BUL9 199 aaKnown RBP15.91■□□□□ 0.14
SDC1-204ENST00000429035 NUB1Q9Y5A7 615 aa15.91■□□□□ 0.14
SDC1-204ENST00000429035 ZFP37Q9Y6Q3 630 aaPredicted RBP15.91■□□□□ 0.14
SDC1-204ENST00000429035 SMIM28A0A1B0GU29 152 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 ANHXE9PGG2 379 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 PAPLNO95428 1278 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 LRG1P02750 347 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 ELF1P32519 619 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 STRN3Q13033 797 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 RAB33AQ14088 237 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 UPP1Q16831 310 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 RINT1Q6NUQ1 792 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 RSPO2Q6UXX9 243 aaPredicted RBP15.9■□□□□ 0.14
SDC1-204ENST00000429035 KCNK18Q7Z418 384 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 DAW1Q8N136 415 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 ADSSL1Q8N142 457 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 CDK5RAP3Q96JB5 506 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 SNX27Q96L92 541 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 ACAP3Q96P50 834 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 SLC38A7Q9NVC3 462 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 ARHGAP28Q9P2N2 729 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 MRPS23Q9Y3D9 190 aaKnown RBP15.9■□□□□ 0.14
SDC1-204ENST00000429035 KIF3AQ9Y496 699 aa15.9■□□□□ 0.14
SDC1-204ENST00000429035 RIF1Q5UIP0 2472 aaKnown RBP15.9■□□□□ 0.14
SDC1-204ENST00000429035 SFI1A8K8P3 1242 aa15.89■□□□□ 0.13
SDC1-204ENST00000429035 PRRG1O14668 218 aa15.89■□□□□ 0.13
SDC1-204ENST00000429035 U2AF2P26368 475 aaKnown RBP eCLIP15.89■□□□□ 0.13
SDC1-204ENST00000429035 GPC5P78333 572 aa15.89■□□□□ 0.13
SDC1-204ENST00000429035 ROR1Q01973 937 aa15.89■□□□□ 0.13
SDC1-204ENST00000429035 MAPK7Q13164 816 aa15.89■□□□□ 0.13
SDC1-204ENST00000429035 PDIA5Q14554 519 aa15.89■□□□□ 0.13
SDC1-204ENST00000429035 VARS2Q5ST30 1063 aaKnown RBP15.89■□□□□ 0.13
SDC1-204ENST00000429035 MPZL3Q6UWV2 235 aa15.89■□□□□ 0.13
SDC1-204ENST00000429035 TAS1R3Q7RTX0 852 aa15.89■□□□□ 0.13
SDC1-204ENST00000429035 NPAS3Q8IXF0 933 aa15.89■□□□□ 0.13
SDC1-204ENST00000429035 TMEM134Q9H6X4 195 aa15.89■□□□□ 0.13
SDC1-204ENST00000429035 SLC2A4RGQ9NR83 387 aa15.89■□□□□ 0.13
SDC1-204ENST00000429035 DNMT3BQ9UBC3 853 aaKnown RBP15.89■□□□□ 0.13
SDC1-204ENST00000429035 SIT1Q9Y3P8 196 aa15.89■□□□□ 0.13
SDC1-204ENST00000429035 R4GN57 208 aa15.89■□□□□ 0.13
SDC1-204ENST00000429035 CFAP54Q96N23 3096 aa15.89■□□□□ 0.13
SDC1-204ENST00000429035 PATJQ8NI35 1801 aa15.89■□□□□ 0.13
SDC1-204ENST00000429035 LAD1O00515 517 aa15.88■□□□□ 0.13
SDC1-204ENST00000429035 LRRN2O75325 713 aa15.88■□□□□ 0.13
SDC1-204ENST00000429035 RHOP08100 348 aa15.88■□□□□ 0.13
SDC1-204ENST00000429035 MCF2P10911 925 aa15.88■□□□□ 0.13
SDC1-204ENST00000429035 MCM4P33991 863 aa15.88■□□□□ 0.13
SDC1-204ENST00000429035 CACNB1Q02641 598 aaPredicted RBP15.88■□□□□ 0.13
SDC1-204ENST00000429035 SNW1Q13573 536 aaKnown RBP15.88■□□□□ 0.13
SDC1-204ENST00000429035 NOLC1Q14978 699 aaKnown RBP eCLIP15.88■□□□□ 0.13
SDC1-204ENST00000429035 UBXN2BQ14CS0 331 aa15.88■□□□□ 0.13
SDC1-204ENST00000429035 IL17AQ16552 155 aa15.88■□□□□ 0.13
SDC1-204ENST00000429035 SEZ6Q53EL9 994 aa15.88■□□□□ 0.13
SDC1-204ENST00000429035 CD300LGQ6UXG3 332 aa15.88■□□□□ 0.13
SDC1-204ENST00000429035 PJA1Q8NG27 643 aa15.88■□□□□ 0.13
SDC1-204ENST00000429035 C18orf25Q96B23 403 aaPredicted RBP15.88■□□□□ 0.13
SDC1-204ENST00000429035 BICD1Q96G01 975 aa15.88■□□□□ 0.13
SDC1-204ENST00000429035 ZBTB45Q96K62 511 aaPredicted RBP15.88■□□□□ 0.13
SDC1-204ENST00000429035 ZMAT2Q96NC0 199 aaKnown RBP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms