RNA–Protein interactions for RNA: ENST00000411767.6

PTPN13-202, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-202ENST00000411767 PLCD1P51178 756 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 GJA9P57773 515 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 RPP38P78345 283 aaKnown RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 NFIL3Q16649 462 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 SYT16Q17RD7 645 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 SCARA3Q6AZY7 606 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 CXXC5Q7LFL8 322 aaKnown RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 PACS2Q86VP3 889 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 OR8H2Q8N162 312 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 FATE1Q969F0 183 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 GPRASP2Q96D09 838 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 STRBPQ96SI9 672 aaKnown RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 ATP8A2Q9NTI2 1148 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 IMPAD1Q9NX62 359 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 HMG20BQ9P0W2 317 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 CDC23Q9UJX2 597 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 STX8Q9UNK0 236 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 ARPC4-TTLL3A0A0A6YYG9 625 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 STX16-NPEPL1H3BU86 382 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 WRBO00258 174 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 PALMO75781 387 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 RASGRP1O95267 797 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 IFNA7P01567 189 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 HSD17B2P37059 387 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 PPARAQ07869 468 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 MSANTD2Q6P1R3 559 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 MTFR2Q6P444 385 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 ZNF530Q6P9A1 599 aaPredicted RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 CHST3Q7LGC8 479 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 SDR16C5Q8N3Y7 309 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 ZNF671Q8TAW3 534 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 EZH1Q92800 747 aaPredicted RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 MND1Q9BWT6 205 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 RIBC2Q9H4K1 309 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 IL1RL2Q9HB29 575 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 FBXO28Q9NVF7 368 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 DNAJC28Q9NX36 388 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 TNPO2O14787 897 aaKnown RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 NDUFB5O43674 189 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 AKAP8O43823 692 aaKnown RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 ATP6V1G1O75348 118 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 RLN1P04808 185 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 ZNF23P17027 643 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 SDSP20132 328 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 FAUP35544 74 aaKnown RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 RAB7AP51149 207 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 SLFN5Q08AF3 891 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 PABPC1LQ4VXU2 614 aaKnown RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 C4orf17Q53FE4 359 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 ALFQ53S48 1182 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 KIAA1755Q5JYT7 1200 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 RPTNQ6XPR3 784 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 LYSMD3Q7Z3D4 306 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 ARHGAP22Q7Z5H3 698 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 ZBTB33Q86T24 672 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 CACTIN-AS1Q8N1I8 211 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 C10orf53Q8N6V4 93 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 TTC8Q8TAM2 541 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 TCP11Q8WWU5 503 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 HDAC2Q92769 488 aaKnown RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 C16orf58Q96GQ5 468 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 LIN37Q96GY3 246 aaPredicted RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 ELMO2Q96JJ3 720 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 CDHR1Q96JP9 859 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 RBM42Q9BTD8 480 aaKnown RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 RBM7Q9Y580 266 aaKnown RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 PCP4L1A6NKN8 68 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 TPD52L2O43399 206 aaKnown RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 PTX3P26022 381 aaPredicted RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 TPP2P29144 1249 aaPredicted RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 METAP2P50579 478 aaKnown RBP eCLIP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 GTF2H3Q13889 308 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 LRRC6Q86X45 466 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 ARID3BQ8IVW6 561 aaPredicted RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 ZNF75CPQ92670 426 aaPredicted RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 NECTIN2Q92692 538 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 CCDC74AQ96AQ1 378 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 ANKRD27Q96NW4 1050 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 UNC45AQ9H3U1 944 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 STN1Q9H668 368 aaKnown RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 AATFQ9NY61 560 aaKnown RBP eCLIP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 ZFP69BQ9UJL9 534 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 STK25O00506 426 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 CNOT3O75175 753 aaKnown RBP4.81□□□□□ -1.64
PTPN13-202ENST00000411767 ZPR1O75312 459 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 SERPINA3P01011 423 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 THEGLP0DJG4 465 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 CACNA2D1P54289 1103 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 PITPNAQ00169 270 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 CAV1Q03135 178 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 XRCC4Q13426 336 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 CDH18Q13634 790 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 MLECQ14165 292 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 TTBK2Q6IQ55 1244 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 SLC25A25Q6KCM7 469 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 SYCE2Q6PIF2 218 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 COMMD2Q86X83 199 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 BRSK2Q8IWQ3 736 aa4.81□□□□□ -1.64
PTPN13-202ENST00000411767 BRSK1Q8TDC3 778 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms