RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 GTPBP10A4D1E9 387 aaKnown RBP15.37■□□□□ 0.05
SKA1-202ENST00000398452 LRRIQ3A6PVS8 624 aaPredicted RBP15.37■□□□□ 0.05
SKA1-202ENST00000398452 RIOK3O14730 519 aaKnown RBP15.37■□□□□ 0.05
SKA1-202ENST00000398452 TEX33O43247 280 aa15.37■□□□□ 0.05
SKA1-202ENST00000398452 CXCL8P10145 99 aa15.37■□□□□ 0.05
SKA1-202ENST00000398452 CCL23P55773 120 aa15.37■□□□□ 0.05
SKA1-202ENST00000398452 TFAMQ00059 246 aaKnown RBP15.37■□□□□ 0.05
SKA1-202ENST00000398452 SYCP1Q15431 976 aa15.37■□□□□ 0.05
SKA1-202ENST00000398452 DUOXA2Q1HG44 320 aa15.37■□□□□ 0.05
SKA1-202ENST00000398452 TSR1Q2NL82 804 aaKnown RBP15.37■□□□□ 0.05
SKA1-202ENST00000398452 ZBTB41Q5SVQ8 909 aa15.37■□□□□ 0.05
SKA1-202ENST00000398452 CRELD2Q6UXH1 353 aaPredicted RBP15.37■□□□□ 0.05
SKA1-202ENST00000398452 Q7L0L9 218 aa15.37■□□□□ 0.05
SKA1-202ENST00000398452 EFCAB3Q8N7B9 438 aa15.37■□□□□ 0.05
SKA1-202ENST00000398452 CEP120Q8N960 986 aa15.37■□□□□ 0.05
SKA1-202ENST00000398452 ZNF397Q8NF99 534 aaPredicted RBP15.37■□□□□ 0.05
SKA1-202ENST00000398452 ERGIC2Q96RQ1 377 aa15.37■□□□□ 0.05
SKA1-202ENST00000398452 IMPG2Q9BZV3 1241 aa15.37■□□□□ 0.05
SKA1-202ENST00000398452 UBN1Q9NPG3 1134 aa15.37■□□□□ 0.05
SKA1-202ENST00000398452 IPPQ9Y573 584 aa15.37■□□□□ 0.05
SKA1-202ENST00000398452 PCDHB2Q9Y5E7 798 aa15.37■□□□□ 0.05
SKA1-202ENST00000398452 ITIH6Q6UXX5 1313 aa15.37■□□□□ 0.05
SKA1-202ENST00000398452 CYP2C18P33260 490 aa15.36■□□□□ 0.05
SKA1-202ENST00000398452 GSDMDP57764 484 aa15.36■□□□□ 0.05
SKA1-202ENST00000398452 TRPC3Q13507 836 aa15.36■□□□□ 0.05
SKA1-202ENST00000398452 ENOX2Q16206 610 aaKnown RBP15.36■□□□□ 0.05
SKA1-202ENST00000398452 WDR44Q5JSH3 913 aa15.36■□□□□ 0.05
SKA1-202ENST00000398452 CACNA2D4Q7Z3S7 1137 aa15.36■□□□□ 0.05
SKA1-202ENST00000398452 TMEM199Q8N511 208 aa15.36■□□□□ 0.05
SKA1-202ENST00000398452 RNF169Q8NCN4 708 aa15.36■□□□□ 0.05
SKA1-202ENST00000398452 TRIM44Q96DX7 344 aaPredicted RBP15.36■□□□□ 0.05
SKA1-202ENST00000398452 TSPAN18Q96SJ8 248 aa15.36■□□□□ 0.05
SKA1-202ENST00000398452 LSM14BQ9BX40 385 aaKnown RBP15.36■□□□□ 0.05
SKA1-202ENST00000398452 GCNT4Q9P109 453 aa15.36■□□□□ 0.05
SKA1-202ENST00000398452 TBX21Q9UL17 535 aa15.36■□□□□ 0.05
SKA1-202ENST00000398452 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.36■□□□□ 0.05
SKA1-202ENST00000398452 LACTBL1A8MY62 500 aa15.35■□□□□ 0.05
SKA1-202ENST00000398452 FAM189A1O60320 539 aa15.35■□□□□ 0.05
SKA1-202ENST00000398452 PIK3CAP42336 1068 aa15.35■□□□□ 0.05
SKA1-202ENST00000398452 DLG4P78352 724 aa15.35■□□□□ 0.05
SKA1-202ENST00000398452 TMEM132DQ14C87 1099 aa15.35■□□□□ 0.05
SKA1-202ENST00000398452 UBXN11Q5T124 520 aa15.35■□□□□ 0.05
SKA1-202ENST00000398452 TRAF7Q6Q0C0 670 aa15.35■□□□□ 0.05
SKA1-202ENST00000398452 SLC24A5Q71RS6 500 aa15.35■□□□□ 0.05
SKA1-202ENST00000398452 RPUSD2Q8IZ73 545 aaKnown RBP15.35■□□□□ 0.05
SKA1-202ENST00000398452 DEFB123Q8N688 67 aa15.35■□□□□ 0.05
SKA1-202ENST00000398452 FBXL13Q8NEE6 735 aa15.35■□□□□ 0.05
SKA1-202ENST00000398452 BEST2Q8NFU1 509 aa15.35■□□□□ 0.05
SKA1-202ENST00000398452 SCLYQ96I15 445 aa15.35■□□□□ 0.05
SKA1-202ENST00000398452 POP1Q99575 1024 aaKnown RBP15.35■□□□□ 0.05
SKA1-202ENST00000398452 NXF3Q9H4D5 531 aaKnown RBP15.35■□□□□ 0.05
SKA1-202ENST00000398452 LRFN2Q9ULH4 789 aa15.35■□□□□ 0.05
SKA1-202ENST00000398452 DERAQ9Y315 318 aa15.35■□□□□ 0.05
SKA1-202ENST00000398452 A0A0U1RQF3 1178 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 PMM2O15305 246 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 RECQL4O94761 1208 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 TIMP1P01033 207 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 AKAP5P24588 427 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 PPP3CAQ08209 521 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 PLEKHG4Q58EX7 1191 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 LMBRD2Q68DH5 695 aaPredicted RBP15.34■□□□□ 0.05
SKA1-202ENST00000398452 DEFB128Q7Z7B8 93 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 DBF4BQ8NFT6 615 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 SNX27Q96L92 541 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 FAM81BQ96LP2 452 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 CRACR2AQ9BSW2 395 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 TRAIPQ9BWF2 469 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 TMEM117Q9H0C3 514 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 RGS18Q9NS28 235 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 FAM207AQ9NSI2 230 aaPredicted RBP15.34■□□□□ 0.05
SKA1-202ENST00000398452 INTS13Q9NVM9 706 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 GIT1Q9Y2X7 761 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 C2CD2Q9Y426 696 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 DAAM1Q9Y4D1 1078 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 HES2Q9Y543 173 aa15.34■□□□□ 0.05
SKA1-202ENST00000398452 TTC26A0AVF1 554 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 KIAA0355O15063 1070 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 NBNO60934 754 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 ZNF623O75123 536 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 EOMESO95936 686 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 PFKMP08237 780 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 KRT19P08727 400 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 DEKP35659 375 aaKnown RBP15.33■□□□□ 0.04
SKA1-202ENST00000398452 CLDN10P78369 228 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 IKBKEQ14164 716 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 DSC3Q14574 896 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 MBTPS1Q14703 1052 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 SLC10A6Q3KNW5 377 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 CBWD6Q4V339 395 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 CBWD3Q5JTY5 395 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 CBWD5Q5RIA9 395 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 JADE1Q6IE81 842 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 SV2AQ7L0J3 742 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 CNGA4Q8IV77 575 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 FMNL3Q8IVF7 1028 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 TMEM192Q8IY95 271 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 ABI1Q8IZP0 508 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 SMG8Q8ND04 991 aaKnown RBP15.33■□□□□ 0.04
SKA1-202ENST00000398452 EHBP1Q8NDI1 1231 aa15.33■□□□□ 0.04
SKA1-202ENST00000398452 PLEKHO2Q8TD55 490 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms