RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 SH3RF1Q7Z6J0 888 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 ARHGEF19Q8IW93 802 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 ATL2Q8NHH9 583 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 CALR3Q96L12 384 aaKnown RBP6.93□□□□□ -1.3
SMC1A-202ENST00000375340 FAM81BQ96LP2 452 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 MIS12Q9H081 205 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 SLC9A2Q9UBY0 812 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 KCNN4O15554 427 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 LCP1P13796 627 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 BRD2P25440 801 aaKnown RBP6.93□□□□□ -1.3
SMC1A-202ENST00000375340 ART3Q13508 389 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 ZNF568Q3ZCX4 644 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 SEZ6Q53EL9 994 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 TRMT10CQ7L0Y3 403 aaKnown RBP6.93□□□□□ -1.3
SMC1A-202ENST00000375340 FGD4Q96M96 766 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 AGPAT3Q9NRZ7 376 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 SEL1LQ9UBV2 794 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 AGO2Q9UKV8 859 aaKnown RBP6.93□□□□□ -1.3
SMC1A-202ENST00000375340 PRR12Q9ULL5 1215 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 ATP5HO75947 161 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 EIF3EP60228 445 aaKnown RBP6.93□□□□□ -1.3
SMC1A-202ENST00000375340 RPS6KA2Q15349 733 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 MORC4Q8TE76 937 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 DHX38Q92620 1227 aaKnown RBP6.93□□□□□ -1.3
SMC1A-202ENST00000375340 CHMP2BQ9UQN3 213 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 CSADQ9Y600 493 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 IVNS1ABPQ9Y6Y0 642 aa6.93□□□□□ -1.3
SMC1A-202ENST00000375340 SKAP2O75563 359 aaPredicted RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 NQO1P15559 274 aaKnown RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 TMEM119Q4V9L6 283 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 DCAF15Q66K64 600 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 ACTRT1Q8TDG2 376 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 SENP7Q9BQF6 1050 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 TLR10Q9BXR5 811 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 CTNNAL1Q9UBT7 734 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 KCNG1Q9UIX4 513 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 FAM47DPA6NHR8 397 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 PFDN1O60925 122 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 MAGEA4P43358 317 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 KCNMA1Q12791 1236 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 RBBP5Q15291 538 aaKnown RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 JADE1Q6IE81 842 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 TMEM154Q6P9G4 183 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 PRCCQ92733 491 aaPredicted RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 PPWD1Q96BP3 646 aaKnown RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 TRIM56Q9BRZ2 755 aaKnown RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 TUBB6Q9BUF5 446 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 PCMTD2Q9NV79 361 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 TAS2R14Q9NYV8 317 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 HAO1Q9UJM8 370 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 RAP1GAPP47736 663 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 IL1RL1Q01638 556 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 GRIK5Q16478 980 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 SLFN12LQ6IEE8 588 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 CLMNQ96JQ2 1002 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 VPS11Q9H270 941 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 DDX56Q9NY93 547 aaKnown RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 IFI35P80217 286 aaPredicted RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 MAPK7Q13164 816 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 ECM1Q16610 540 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 FAM102AQ5T9C2 384 aaPredicted RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 ST13P4Q8IZP2 240 aaPredicted RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 TSSK1BQ9BXA7 367 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 SIK3Q9Y2K2 1263 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 KLRC4O43908 158 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 FAF1Q9UNN5 650 aaPredicted RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 C4AP0C0L4 1744 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 C4BP0C0L5 1744 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 MRC1P22897 1456 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 CYTH3O43739 400 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 MEA1Q16626 185 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 RWDD4Q6NW29 188 aaKnown RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 KRT27Q7Z3Y8 459 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 TMC3Q7Z5M5 1100 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 SP8Q8IXZ3 490 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 RCOR2Q8IZ40 523 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 FAM71DQ8N9W8 422 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 CYP2W1Q8TAV3 490 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 CCDC124Q96CT7 223 aaKnown RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 RNF146Q9NTX7 359 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 PSMC3IPQ9P2W1 217 aaPredicted RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 SCN11AQ9UI33 1791 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 GPR75-ASB3A0A0A6YYF3 556 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 OSBPP22059 807 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 PGM1P36871 562 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 ARL4AP40617 200 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 CUL3Q13618 768 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 ITIH4Q14624 930 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 PLCB4Q15147 1175 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 HABP4Q5JVS0 413 aaKnown RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 NUDCD3Q8IVD9 361 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 RYBPQ8N488 228 aaPredicted RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 ATP11CQ8NB49 1132 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 PDZD8Q8NEN9 1154 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 TMEM150BA6NC51 233 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 POLRMTO00411 1230 aaKnown RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 APOL1O14791 398 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 RPL21P46778 160 aaKnown RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 NME3Q13232 169 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 EPHA7Q15375 998 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms