RNA–Protein interactions for RNA: ENST00000374747.9

NPLOC4-202, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 2 BASIC

Gene NPLOC4, Length 5,538 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-202ENST00000374747 RFX1P22670 979 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 HIC1Q14526 733 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 RAPGEF5Q92565 580 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 TIPINQ9BVW5 301 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 SLC9A2Q9UBY0 812 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 PRDM4Q9UKN5 801 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 FOXN1O15353 648 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 EIF3HO15372 352 aaKnown RBP eCLIP12.97□□□□□ -0.332e-7■□□□□ 11
NPLOC4-202ENST00000374747 ASAP2O43150 1006 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 PGM1P36871 562 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 NFIAQ12857 509 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 STAT4Q14765 748 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 RABGAP1LQ5R372 815 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 RWDD4Q6NW29 188 aaKnown RBP12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 SAMD7Q7Z3H4 446 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 TTC8Q8TAM2 541 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 AGXT2Q9BYV1 514 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 VPS33BQ9H267 617 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 EHD2Q9NZN4 543 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 ZNF711Q9Y462 761 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 GTPBP10A4D1E9 387 aaKnown RBP12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 ANP32DO95626 131 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 MYBL1P10243 752 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 PHKA2P46019 1235 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 DDR1Q08345 913 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 DRAP1Q14919 205 aaPredicted RBP12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 NCAPHQ15003 741 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 SEC23AQ15436 765 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 PASD1Q8IV76 773 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 NAF1Q96HR8 494 aaKnown RBP12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 C2orf40Q9H1Z8 148 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 IP6K2Q9UHH9 426 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 SNX12Q9UMY4 172 aa12.97□□□□□ -0.33
NPLOC4-202ENST00000374747 FTLP02792 175 aaPredicted RBP12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 KRT7P08729 469 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 IRX1P78414 480 aaPredicted RBP12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 BAATQ14032 418 aaPredicted RBP12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 MAPRE2Q15555 327 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 CCDC92Q53HC0 331 aaPredicted RBP12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 IZUMO3Q5VZ72 239 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 RASSF3Q86WH2 238 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 RHOT1Q8IXI2 618 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 KCTD17Q8N5Z5 321 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 MTBPQ96DY7 904 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 FSD1LQ9BXM9 530 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 EDEM3Q9BZQ6 932 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 ABCF3Q9NUQ8 709 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 SLC16A4O15374 487 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 CLDN3O15551 220 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 ZNF394Q53GI3 561 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 TMEM270Q6UE05 265 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 OR6B3Q8NGW1 331 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 GTF3C2Q8WUA4 911 aaPredicted RBP12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 LRRC1Q9BTT6 524 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 UBE4BO95155 1302 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 TNFAIP2Q03169 654 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 NSUN2Q08J23 767 aaKnown RBP eCLIP12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 SNX19Q92543 992 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 C7orf25Q9BPX7 421 aa12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 INTS2Q9H0H0 1204 aaKnown RBP12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 JPH1Q9HDC5 661 aaPredicted RBP12.96□□□□□ -0.33
NPLOC4-202ENST00000374747 DENND3A2RUS2 1198 aa12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 TCP11X1B4DZS4 312 aa12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 ANXA13P27216 316 aa12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 CAP2P40123 477 aa12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 AP1B1Q10567 949 aa12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 FOXD4Q12950 439 aaPredicted RBP12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 PDXDC1Q6P996 788 aa12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 LRIG3Q6UXM1 1119 aa12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 CCT8L2Q96SF2 557 aa12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 DDX56Q9NY93 547 aaKnown RBP12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 KIF17Q9P2E2 1029 aa12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 AMACRQ9UHK6 382 aa12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 APOA1P02647 267 aa12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 SNAPC2Q13487 334 aa12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 PRMT1Q99873 361 aaKnown RBP12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 SLC13A1Q9BZW2 595 aa12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 CHCHD3Q9NX63 227 aaKnown RBP12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 SUFUQ9UMX1 484 aa12.96□□□□□ -0.34
NPLOC4-202ENST00000374747 RGPD5Q99666 1765 aa12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 CUL3Q13618 768 aa12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 Q3C1V9 767 aa12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 FBXW10Q5XX13 1052 aa12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 XRRA1Q6P2D8 792 aa12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 C15orf52Q6ZUT6 534 aaKnown RBP12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 CATSPER4Q7RTX7 472 aa12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 FAM163AQ96GL9 167 aaPredicted RBP12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 TEX12Q9BXU0 123 aa12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 ASPSCR1Q9BZE9 553 aa12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 AGGF1Q8N302 714 aaeCLIP12.95□□□□□ -0.342e-7■□□□□ 10.1
NPLOC4-202ENST00000374747 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 N4BP2Q86UW6 1770 aaPredicted RBP12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 KDM1AO60341 852 aa12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 TBXAS1P24557 533 aaPredicted RBP12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 PSMC1P62191 440 aaKnown RBP12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 KLC1Q07866 573 aa12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 ALKBH8Q96BT7 664 aaKnown RBP12.95□□□□□ -0.34
NPLOC4-202ENST00000374747 RNPC3Q96LT9 517 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms