RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 LRRC14Q15048 493 aa19■□□□□ 0.63
COL18A1-202ENST00000355480 PGBD3Q8N328 593 aa19■□□□□ 0.63
COL18A1-202ENST00000355480 ZNF512Q96ME7 567 aaPredicted RBP19■□□□□ 0.63
COL18A1-202ENST00000355480 PCDHB8Q9UN66 801 aa19■□□□□ 0.63
COL18A1-202ENST00000355480 SGSM1Q2NKQ1 1148 aa19■□□□□ 0.63
COL18A1-202ENST00000355480 RRM2BQ7LG56 351 aa19■□□□□ 0.63
COL18A1-202ENST00000355480 NAF1Q96HR8 494 aaKnown RBP19■□□□□ 0.63
COL18A1-202ENST00000355480 ITGA4P13612 1032 aa19■□□□□ 0.63
COL18A1-202ENST00000355480 STOX1Q6ZVD7 989 aa19■□□□□ 0.63
COL18A1-202ENST00000355480 USP33Q8TEY7 942 aa19■□□□□ 0.63
COL18A1-202ENST00000355480 KDM4CQ9H3R0 1056 aa19■□□□□ 0.63
COL18A1-202ENST00000355480 VCPKMTQ9H867 229 aa19■□□□□ 0.63
COL18A1-202ENST00000355480 OCM2P0CE71 109 aa19■□□□□ 0.63
COL18A1-202ENST00000355480 OCMP0CE72 109 aaPredicted RBP19■□□□□ 0.63
COL18A1-202ENST00000355480 SF3B3Q15393 1217 aaKnown RBP19■□□□□ 0.63
COL18A1-202ENST00000355480 ATPAF2Q8N5M1 289 aa19■□□□□ 0.63
COL18A1-202ENST00000355480 EML4Q9HC35 981 aaKnown RBP19■□□□□ 0.63
COL18A1-202ENST00000355480 CLCA2Q9UQC9 943 aa19■□□□□ 0.63
COL18A1-202ENST00000355480 SNX5Q9Y5X3 404 aa19■□□□□ 0.63
COL18A1-202ENST00000355480 PSMD14O00487 310 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 MAP4P27816 1152 aaKnown RBP18.99■□□□□ 0.63
COL18A1-202ENST00000355480 SNRNP35Q16560 246 aaKnown RBP18.99■□□□□ 0.63
COL18A1-202ENST00000355480 SBK1Q52WX2 424 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 HHIPL2Q6UWX4 724 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 ANKS3Q6ZW76 656 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 RCOR2Q8IZ40 523 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 PHF20Q9BVI0 1012 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 ZCCHC11Q5TAX3 1644 aaKnown RBP18.99■□□□□ 0.63
COL18A1-202ENST00000355480 GRIN3BO60391 1043 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 SNX17Q15036 470 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 CCSER1Q9C0I3 900 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 CYP4F11Q9HBI6 524 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 WDR35Q9P2L0 1181 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 LIMA1Q9UHB6 759 aaKnown RBP18.99■□□□□ 0.63
COL18A1-202ENST00000355480 IRF1P10914 325 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 KCNA4P22459 653 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 PRKCEQ02156 737 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 TAGAPQ8N103 731 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 ZSCAN9O15535 394 aaPredicted RBP18.99■□□□□ 0.63
COL18A1-202ENST00000355480 SENP1Q9P0U3 644 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 PREX2Q70Z35 1606 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 CD4P01730 458 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 ATP1A1P05023 1023 aaKnown RBP18.99■□□□□ 0.63
COL18A1-202ENST00000355480 SERPIND1P05546 499 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 AKT1P31749 480 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 RABL6Q3YEC7 729 aaPredicted RBP18.99■□□□□ 0.63
COL18A1-202ENST00000355480 COBLL1Q53SF7 1204 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 PLA2G4FQ68DD2 849 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 IL31Q6EBC2 164 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 ATL2Q8NHH9 583 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 CCDC90BQ9GZT6 254 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 MUC3BQ9H195 1237 aa18.99■□□□□ 0.63
COL18A1-202ENST00000355480 HIST1H2AGP0C0S8 130 aaPredicted RBP18.98■□□□□ 0.63
COL18A1-202ENST00000355480 HIST1H2ADP20671 130 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 FAM151AQ8WW52 585 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 PABPC5Q96DU9 382 aaKnown RBP18.98■□□□□ 0.63
COL18A1-202ENST00000355480 CLMNQ96JQ2 1002 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 HIST1H2AHQ96KK5 128 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 HIST1H2AJQ99878 128 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 SENP7Q9BQF6 1050 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 H2AFJQ9BTM1 129 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 AMACRQ9UHK6 382 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 TLR2O60603 784 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 RFC5P40937 340 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 CCDC144BQ3MJ40 725 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 RBBP8NLQ8NC74 664 aaPredicted RBP18.98■□□□□ 0.63
COL18A1-202ENST00000355480 NOP53Q9NZM5 478 aaKnown RBP18.98■□□□□ 0.63
COL18A1-202ENST00000355480 SLC4A7Q9Y6M7 1214 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 CCL15-CCL14A0A0B4J2E2 113 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 TBX3O15119 743 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 CYP2C19P33261 490 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 CCL15Q16663 113 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 MTHFD1LQ6UB35 978 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 TBC1D19Q8N5T2 526 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 DACH2Q96NX9 599 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 STK33Q9BYT3 514 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 FAM205CA6NFA0 338 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 SLC25A27O95847 323 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 GLB1LQ6UWU2 654 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 ABTB1Q969K4 478 aaPredicted RBP18.98■□□□□ 0.63
COL18A1-202ENST00000355480 TSSK1BQ9BXA7 367 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 RUBCNLQ9H714 662 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 SLC38A7Q9NVC3 462 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 FBXL5Q9UKA1 691 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 DDX5P17844 614 aaKnown RBP18.98■□□□□ 0.63
COL18A1-202ENST00000355480 FGFR4P22455 802 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 GMPSP49915 693 aaPredicted RBP18.98■□□□□ 0.63
COL18A1-202ENST00000355480 PDAP1Q13442 181 aaKnown RBP18.98■□□□□ 0.63
COL18A1-202ENST00000355480 MMS22LQ6ZRQ5 1243 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 GTF3C2Q8WUA4 911 aaPredicted RBP18.98■□□□□ 0.63
COL18A1-202ENST00000355480 FAM161BQ96MY7 647 aa18.98■□□□□ 0.63
COL18A1-202ENST00000355480 SCAF8Q9UPN6 1271 aaKnown RBP18.98■□□□□ 0.63
COL18A1-202ENST00000355480 GMNCA6NCL1 334 aa18.97■□□□□ 0.63
COL18A1-202ENST00000355480 FMO5P49326 533 aa18.97■□□□□ 0.63
COL18A1-202ENST00000355480 VPS72Q15906 364 aa18.97■□□□□ 0.63
COL18A1-202ENST00000355480 MGAT5BQ3V5L5 792 aa18.97■□□□□ 0.63
COL18A1-202ENST00000355480 METTL16Q86W50 562 aaKnown RBP18.97■□□□□ 0.63
COL18A1-202ENST00000355480 SCFD1Q8WVM8 642 aa18.97■□□□□ 0.63
COL18A1-202ENST00000355480 STX18Q9P2W9 335 aaKnown RBP18.97■□□□□ 0.63
COL18A1-202ENST00000355480 AP3B1O00203 1094 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms