RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 TTC23LQ6PF05 361 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 MAGEC3Q8TD91 643 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 ANKRD7Q92527 254 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 CAVIN3Q969G5 261 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 ERAP1Q9NZ08 941 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 LOC102724428A0A0B4J2F2 783 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 PTX3P26022 381 aaPredicted RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 SIK1P57059 783 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 HECTD3Q5T447 861 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 ANKRD13AQ8IZ07 590 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 CATSPERBQ9H7T0 1116 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 RIC8BQ9NVN3 520 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 ANKRD6Q9Y2G4 727 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 NWD2Q9ULI1 1742 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 FAM47DPA6NHR8 397 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 ERCC2P18074 760 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 CALB2P22676 271 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 PMLP29590 882 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 AXLP30530 894 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 TUFMP49411 452 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 AARSP49588 968 aaKnown RBP eCLIP4.23□□□□□ -1.73
USH2A-201ENST00000307340 WASHC5Q12768 1159 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 C1DQ13901 141 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 HDDC2Q7Z4H3 204 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 PRKD2Q9BZL6 878 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 CHCHD3Q9NX63 227 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 DRG1Q9Y295 367 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 PCDHA5Q9Y5H7 936 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 SAGE2PA6NJ88 616 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 IFRD1O00458 451 aaPredicted RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 HSPA4LO95757 839 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 P4HBP07237 508 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 S100A5P33763 92 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 ST13P50502 369 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 ZDHHC20Q5W0Z9 365 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 DCPSQ96C86 337 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 FAM207AQ9NSI2 230 aaPredicted RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 ADAM30Q9UKF2 790 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 CORO1CQ9ULV4 474 aaPredicted RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 K7ENM7 598 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 MAPK8P45983 427 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 RGS4P49798 205 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 ELMOD1Q8N336 334 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 BEGAINQ9BUH8 593 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 EMILIN2Q9BXX0 1053 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 ISCUQ9H1K1 167 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 CCNL1Q9UK58 526 aaPredicted RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 PCDHGB4Q9UN71 923 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 TOPAZ1Q8N9V7 1692 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 CD3EAPO15446 510 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 PLA2G6O60733 806 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 CNOT3O75175 753 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 KHDRBS2Q5VWX1 349 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 LRRC43Q8N309 656 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 SH2D3CQ8N5H7 860 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 PANK2Q9BZ23 570 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 STMN3Q9NZ72 180 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 NCKIPSDQ9NZQ3 722 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 SEC14L4Q9UDX3 406 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 H3BRJ5 948 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 RIMBP2O15034 1052 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 LSM1O15116 133 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 ITGA10O75578 1167 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 NFX1Q12986 1120 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 PPM1KQ8N3J5 372 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 PTCD2Q8WV60 388 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 ARHGEF26Q96DR7 871 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 RAD21L1Q9H4I0 556 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 ZBTB3Q9H5J0 574 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 SNX12Q9UMY4 172 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 RGPD1P0DJD0 1748 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 H3BMM5 538 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 SOX30O94993 753 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 GNRH1P01148 92 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 TXKP42681 527 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 NR5A1Q13285 461 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 MTMR1Q13613 665 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 NDUFA5Q16718 116 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 GET4Q7L5D6 327 aaPredicted RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 NATD1Q8N6N6 113 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 AFG1LQ8WV93 481 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 PIK3R5Q8WYR1 880 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 VPS33AQ96AX1 596 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 MRPL1Q9BYD6 325 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 CIDEBQ9UHD4 219 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 MYPNQ86TC9 1320 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 PNMA6EA0A0J9YXQ4 647 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 H7C1W4 665 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 TK2O00142 265 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 CYP2E1P05181 493 aaPredicted RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 NAB2Q15742 525 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 STXBP2Q15833 593 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 PTPN21Q16825 1174 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 PPP6R3Q5H9R7 873 aaPredicted RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 BARGINQ6ZT62 677 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 PNMA8AQ86V59 439 aaPredicted RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 STK40Q8N2I9 435 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 NSUN7Q8NE18 718 aaKnown RBP4.23□□□□□ -1.73
USH2A-201ENST00000307340 HEXDCQ8WVB3 486 aa4.23□□□□□ -1.73
USH2A-201ENST00000307340 TMEM8AQ9HCN3 771 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms