RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 GOLGA6L1Q8N7Z2 621 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 TRAPPC12Q8WVT3 735 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 CAVIN3Q969G5 261 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 SPAG5Q96R06 1193 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 CCDC113Q9H0I3 377 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 CWC15Q9P013 229 aaKnown RBP18.09■□□□□ 0.49
CPSF4-201ENST00000292476 A0A087X0T9 212 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 ACKR2O00590 384 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 CLDN3O15551 220 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 SYF2O95926 243 aaKnown RBP18.09■□□□□ 0.49
CPSF4-201ENST00000292476 PRKCBP05771 671 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 FAM228BP0C875 321 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 GNAT1P11488 350 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 ACTN2P35609 894 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 LMAN1P49257 510 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 CLCN3P51790 818 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 MLLT1Q03111 559 aaPredicted RBP18.09■□□□□ 0.49
CPSF4-201ENST00000292476 FSCN1Q16658 493 aaKnown RBP18.09■□□□□ 0.49
CPSF4-201ENST00000292476 ZNF410Q86VK4 478 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 VPS36Q86VN1 386 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 NLRP4Q96MN2 994 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 LRRC1Q9BTT6 524 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 NENFQ9UMX5 172 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 AKT3Q9Y243 479 aa18.09■□□□□ 0.49
CPSF4-201ENST00000292476 A0A0A6YYK5 440 aaPredicted RBP18.08■□□□□ 0.48
CPSF4-201ENST00000292476 A0A0B4J269 797 aa18.08■□□□□ 0.48
CPSF4-201ENST00000292476 MSCO60682 206 aa18.08■□□□□ 0.48
CPSF4-201ENST00000292476 RNF40O75150 1001 aa18.08■□□□□ 0.48
CPSF4-201ENST00000292476 PALMO75781 387 aa18.08■□□□□ 0.48
CPSF4-201ENST00000292476 NAP1L1P55209 391 aaKnown RBP18.08■□□□□ 0.48
CPSF4-201ENST00000292476 JAM2P57087 298 aa18.08■□□□□ 0.48
CPSF4-201ENST00000292476 CYP24A1Q07973 514 aa18.08■□□□□ 0.48
CPSF4-201ENST00000292476 MFSD10Q14728 455 aa18.08■□□□□ 0.48
CPSF4-201ENST00000292476 FAM187BQ17R55 369 aa18.08■□□□□ 0.48
CPSF4-201ENST00000292476 KIAA0753Q2KHM9 967 aa18.08■□□□□ 0.48
CPSF4-201ENST00000292476 C8orf74Q6P047 294 aa18.08■□□□□ 0.48
CPSF4-201ENST00000292476 LEKR1Q6ZMV7 388 aa18.08■□□□□ 0.48
CPSF4-201ENST00000292476 CBWD2Q8IUF1 395 aa18.08■□□□□ 0.48
CPSF4-201ENST00000292476 PARD3BQ8TEW8 1205 aa18.08■□□□□ 0.48
CPSF4-201ENST00000292476 SAAL1Q96ER3 474 aa18.08■□□□□ 0.48
CPSF4-201ENST00000292476 MSTO1Q9BUK6 570 aa18.08■□□□□ 0.48
CPSF4-201ENST00000292476 TARS2Q9BW92 718 aaKnown RBP18.08■□□□□ 0.48
CPSF4-201ENST00000292476 FZD8Q9H461 694 aa18.08■□□□□ 0.48
CPSF4-201ENST00000292476 GOLGA8IPA6NC78 632 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 GOLGA8JA6NMD2 632 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 INO80B-WBP1J3KQ70 363 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 SEPT4O43236 478 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 BUB1O43683 1085 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 IVLP07476 585 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 MYBL2P10244 700 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 PSEN2P49810 448 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 GJA9P57773 515 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 PCBP1Q15365 356 aaKnown RBP eCLIP18.07■□□□□ 0.48
CPSF4-201ENST00000292476 KRT39Q6A163 491 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 EIF1ADQ8N9N8 165 aaKnown RBP18.07■□□□□ 0.48
CPSF4-201ENST00000292476 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.07■□□□□ 0.483e-10■■■■■ 88.3
CPSF4-201ENST00000292476 FNBP1Q96RU3 617 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 FAM213AQ9BRX8 229 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 TCHPQ9BT92 498 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.07■□□□□ 0.48
CPSF4-201ENST00000292476 INO80BQ9C086 356 aaPredicted RBP18.07■□□□□ 0.48
CPSF4-201ENST00000292476 TMEM8AQ9HCN3 771 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 ADAMTS1Q9UHI8 967 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 SIP14410 1827 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 FRMPD3Q5JV73 1810 aa18.07■□□□□ 0.48
CPSF4-201ENST00000292476 MYH10P35580 1976 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 HAS3O00219 553 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 MYL3P08590 195 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 CCDC172P0C7W6 258 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 TRIM49P0CI25 452 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 TRIM49CP0CI26 452 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 SMIM10L2AP0DMW4 78 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 SMIM10L2BP0DMW5 78 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 RARBP10826 455 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 FERP16591 822 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 SLC9A1P19634 815 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 MXI1P50539 228 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 HNRNPH2P55795 449 aaKnown RBP18.06■□□□□ 0.48
CPSF4-201ENST00000292476 NKX3-2P78367 333 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 PTK2Q05397 1052 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 PRPF4BQ13523 1007 aaKnown RBP18.06■□□□□ 0.48
CPSF4-201ENST00000292476 SURF1Q15526 300 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 ZSCAN26Q16670 478 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 ALS2CLQ60I27 953 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 TSHZ1Q6ZSZ6 1077 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 IFT20Q8IY31 132 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 PBKQ96KB5 322 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 FAM81BQ96LP2 452 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 ACO2Q99798 780 aaKnown RBP18.06■□□□□ 0.48
CPSF4-201ENST00000292476 CRISPLD2Q9H0B8 497 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 SIX2Q9NPC8 291 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 SMIM35A0A1B0GVV1 85 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 GOLGA6BA6NDN3 693 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 NCK2O43639 380 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 AP3M2P53677 418 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 GYS2P54840 703 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 PSMD6Q15008 389 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 KYAT1Q16773 422 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 TMEM132AQ24JP5 1023 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 CBWD6Q4V339 395 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms