RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 PHF13Q86YI8 300 aaPredicted RBP11.97□□□□□ -0.49
MSH3-201ENST00000265081 CELF4Q9BZC1 486 aaKnown RBP11.97□□□□□ -0.49
MSH3-201ENST00000265081 PYGMP11217 842 aa11.96□□□□□ -0.49
MSH3-201ENST00000265081 SLC1A1P43005 524 aa11.96□□□□□ -0.49
MSH3-201ENST00000265081 RNASE9P60153 205 aaKnown RBP11.96□□□□□ -0.49
MSH3-201ENST00000265081 VGLL4Q14135 290 aa11.96□□□□□ -0.49
MSH3-201ENST00000265081 SAMD1Q6SPF0 538 aaPredicted RBP11.96□□□□□ -0.49
MSH3-201ENST00000265081 CYFIP1Q7L576 1253 aa11.96□□□□□ -0.49
MSH3-201ENST00000265081 DDX42Q86XP3 938 aaKnown RBP eCLIP11.96□□□□□ -0.49
MSH3-201ENST00000265081 SLC13A5Q86YT5 568 aaPredicted RBP11.96□□□□□ -0.49
MSH3-201ENST00000265081 PPM1KQ8N3J5 372 aa11.96□□□□□ -0.49
MSH3-201ENST00000265081 ART4Q93070 314 aa11.96□□□□□ -0.49
MSH3-201ENST00000265081 APOBEC3GQ9HC16 384 aaKnown RBP11.96□□□□□ -0.49
MSH3-201ENST00000265081 CTTNBP2NLQ9P2B4 639 aa11.96□□□□□ -0.49
MSH3-201ENST00000265081 PDCD11Q14690 1871 aaKnown RBP11.96□□□□□ -0.49
MSH3-201ENST00000265081 PODXLO00592 558 aa11.96□□□□□ -0.49
MSH3-201ENST00000265081 TRIM72Q6ZMU5 477 aa11.96□□□□□ -0.49
MSH3-201ENST00000265081 C3orf20Q8ND61 904 aa11.96□□□□□ -0.49
MSH3-201ENST00000265081 ACP6Q9NPH0 428 aa11.96□□□□□ -0.49
MSH3-201ENST00000265081 GGA2Q9UJY4 613 aa11.96□□□□□ -0.49
MSH3-201ENST00000265081 HNRNPDLO14979 420 aaKnown RBP11.96□□□□□ -0.5
MSH3-201ENST00000265081 GAS2O43903 313 aaKnown RBP11.96□□□□□ -0.5
MSH3-201ENST00000265081 DNA2P51530 1060 aa11.96□□□□□ -0.5
MSH3-201ENST00000265081 GUCY2FP51841 1108 aa11.96□□□□□ -0.5
MSH3-201ENST00000265081 AP3M2P53677 418 aa11.96□□□□□ -0.5
MSH3-201ENST00000265081 KLF1Q13351 362 aaPredicted RBP11.96□□□□□ -0.5
MSH3-201ENST00000265081 KCNH4Q9UQ05 1017 aa11.96□□□□□ -0.5
MSH3-201ENST00000265081 BCS1LQ9Y276 419 aa11.96□□□□□ -0.5
MSH3-201ENST00000265081 GOLGA6L10A0A0M3HER8 536 aa11.96□□□□□ -0.5
MSH3-201ENST00000265081 CDH5P33151 784 aaPredicted RBP11.96□□□□□ -0.5
MSH3-201ENST00000265081 RHBDF2Q6PJF5 856 aa11.96□□□□□ -0.5
MSH3-201ENST00000265081 FAXDC2Q96IV6 333 aa11.96□□□□□ -0.5
MSH3-201ENST00000265081 FAM213AQ9BRX8 229 aa11.96□□□□□ -0.5
MSH3-201ENST00000265081 PTPRHQ9HD43 1115 aa11.96□□□□□ -0.5
MSH3-201ENST00000265081 FZD1Q9UP38 647 aa11.96□□□□□ -0.5
MSH3-201ENST00000265081 ADCY3O60266 1144 aa11.95□□□□□ -0.5
MSH3-201ENST00000265081 MSCO60682 206 aa11.95□□□□□ -0.5
MSH3-201ENST00000265081 EIF3BP55884 814 aaKnown RBP11.95□□□□□ -0.5
MSH3-201ENST00000265081 BPIFB4P59827 614 aa11.95□□□□□ -0.5
MSH3-201ENST00000265081 CAPSQ13938 189 aa11.95□□□□□ -0.5
MSH3-201ENST00000265081 PLEKHA7Q6IQ23 1121 aa11.95□□□□□ -0.5
MSH3-201ENST00000265081 AADACL2Q6P093 401 aa11.95□□□□□ -0.5
MSH3-201ENST00000265081 DDX27Q96GQ7 796 aaKnown RBP11.95□□□□□ -0.5
MSH3-201ENST00000265081 AGO2Q9UKV8 859 aaKnown RBP11.95□□□□□ -0.5
MSH3-201ENST00000265081 HLA-DRAP01903 254 aa11.95□□□□□ -0.5
MSH3-201ENST00000265081 TRIM51Q9BSJ1 452 aa11.95□□□□□ -0.5
MSH3-201ENST00000265081 GJA3Q9Y6H8 435 aa11.95□□□□□ -0.5
MSH3-201ENST00000265081 SCN4AP35499 1836 aa11.95□□□□□ -0.5
MSH3-201ENST00000265081 GSCP56915 257 aaPredicted RBP11.95□□□□□ -0.5
MSH3-201ENST00000265081 NOMO3P69849 1222 aa11.95□□□□□ -0.5
MSH3-201ENST00000265081 CNTN2Q02246 1040 aa11.95□□□□□ -0.5
MSH3-201ENST00000265081 MKRN4PQ13434 485 aaPredicted RBP11.95□□□□□ -0.5
MSH3-201ENST00000265081 CUL2Q13617 745 aa11.95□□□□□ -0.5
MSH3-201ENST00000265081 PLPPR4Q7Z2D5 763 aa11.95□□□□□ -0.5
MSH3-201ENST00000265081 C18orf8Q96DM3 657 aa11.95□□□□□ -0.5
MSH3-201ENST00000265081 NFKBIZQ9BYH8 718 aa11.95□□□□□ -0.5
MSH3-201ENST00000265081 CLTAP09496 248 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 PTPN7P35236 360 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 COILP38432 576 aaPredicted RBP11.94□□□□□ -0.5
MSH3-201ENST00000265081 MCL1Q07820 350 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 METTL7BQ6UX53 244 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 SYDE1Q6ZW31 735 aaPredicted RBP11.94□□□□□ -0.5
MSH3-201ENST00000265081 BRSK2Q8IWQ3 736 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 CCDC127Q96BQ5 260 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 ZNF653Q96CK0 615 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 NR1D1P20393 614 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 TBXAS1P24557 533 aaPredicted RBP11.94□□□□□ -0.5
MSH3-201ENST00000265081 COPB2P35606 906 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 CPNE8Q86YQ8 564 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 C1orf112Q9NSG2 853 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 LCMT1Q9UIC8 334 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 ATMINO43313 823 aaPredicted RBP11.94□□□□□ -0.5
MSH3-201ENST00000265081 PSTPIP1O43586 416 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 IVDP26440 423 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 RPL21P46778 160 aaKnown RBP11.94□□□□□ -0.5
MSH3-201ENST00000265081 LIG4P49917 911 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 POLGP54098 1239 aaPredicted RBP11.94□□□□□ -0.5
MSH3-201ENST00000265081 RWDD2BP57060 319 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 NEDD9Q14511 834 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 PTPROQ16827 1216 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 CCDC142Q17RM4 750 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 RELL1Q8IUW5 271 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 WDR49Q8IV35 697 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 ABRAQ8N0Z2 381 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 PGM2Q96G03 612 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 RUFY1Q96T51 708 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 FMO2Q99518 471 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 SPATC1LQ9H0A9 340 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 PARP2Q9UGN5 583 aa11.94□□□□□ -0.5
MSH3-201ENST00000265081 TCRBV7S2A1N4TA0A589 114 aa11.93□□□□□ -0.5
MSH3-201ENST00000265081 RARAP10276 462 aa11.93□□□□□ -0.5
MSH3-201ENST00000265081 C1QBPQ07021 282 aaKnown RBP11.93□□□□□ -0.5
MSH3-201ENST00000265081 ZNF211Q13398 564 aaPredicted RBP11.93□□□□□ -0.5
MSH3-201ENST00000265081 MTERF2Q49AM1 385 aa11.93□□□□□ -0.5
MSH3-201ENST00000265081 PPP1R15BQ5SWA1 713 aa11.93□□□□□ -0.5
MSH3-201ENST00000265081 CENPTQ96BT3 561 aa11.93□□□□□ -0.5
MSH3-201ENST00000265081 PABPC3Q9H361 631 aaKnown RBP11.93□□□□□ -0.5
MSH3-201ENST00000265081 MDH1P40925 334 aaKnown RBP11.93□□□□□ -0.5
MSH3-201ENST00000265081 SEL1L2Q5TEA6 688 aa11.93□□□□□ -0.5
MSH3-201ENST00000265081 PRAMEF18Q5VWM3 479 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms