RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 XPNPEP3Q9NQH7 507 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 NOC2LQ9Y3T9 749 aaKnown RBP14.51□□□□□ -0.09
LDLR-201ENST00000252444 CRCPO75575 148 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 ZBED1O96006 694 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 RARRES1P49788 294 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 RPL10AP62906 217 aaKnown RBP14.51□□□□□ -0.09
LDLR-201ENST00000252444 SFSWAPQ12872 951 aaKnown RBP14.51□□□□□ -0.09
LDLR-201ENST00000252444 FSCN1Q16658 493 aaKnown RBP14.51□□□□□ -0.09
LDLR-201ENST00000252444 PLA2G4FQ68DD2 849 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 NFRKBQ6P4R8 1299 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 SLC9A9Q8IVB4 645 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 KIRREL3Q8IZU9 778 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 ZNF112Q9UJU3 913 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 USP2O75604 605 aaPredicted RBP14.51□□□□□ -0.09
LDLR-201ENST00000252444 ABL1P00519 1130 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 NOP14P78316 857 aaKnown RBP14.51□□□□□ -0.09
LDLR-201ENST00000252444 ZFPM1Q8IX07 1006 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 RBBP8NLQ8NC74 664 aaPredicted RBP14.51□□□□□ -0.09
LDLR-201ENST00000252444 PPTC7Q8NI37 304 aa14.51□□□□□ -0.09
LDLR-201ENST00000252444 MKRN1Q9UHC7 482 aaKnown RBP14.51□□□□□ -0.09
LDLR-201ENST00000252444 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.51□□□□□ -0.09
LDLR-201ENST00000252444 NUP98P52948 1817 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 SOWAHDA6NJG2 315 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 SGK1O00141 431 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 RGS16O15492 202 aaPredicted RBP14.5□□□□□ -0.09
LDLR-201ENST00000252444 PSMC4P43686 418 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 ARHGAP15Q53QZ3 475 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 KLHDC7AQ5VTJ3 777 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 BCAP29Q9UHQ4 241 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 A0A0A6YYK5 440 aaPredicted RBP14.5□□□□□ -0.09
LDLR-201ENST00000252444 LRRD1A4D1F6 860 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 NFKBIEO00221 500 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 ADCY3O60266 1144 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 CYBBP04839 570 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 GZMAP12544 262 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 NNMTP40261 264 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 NLRP11P59045 1033 aaKnown RBP14.5□□□□□ -0.09
LDLR-201ENST00000252444 CASC4Q6P4E1 433 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 C12orf56Q8IXR9 622 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 RAB3IL1Q8TBN0 382 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 FAXDC2Q96IV6 333 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 NUP85Q9BW27 656 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 KCNK9Q9NPC2 374 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 DDX41Q9UJV9 622 aaKnown RBP14.5□□□□□ -0.09
LDLR-201ENST00000252444 CPB1P15086 417 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 MX2P20592 715 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 PPM1FP49593 454 aaPredicted RBP14.5□□□□□ -0.09
LDLR-201ENST00000252444 LAMTOR4Q0VGL1 99 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 ANO4Q32M45 955 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 TMEM86AQ8N2M4 240 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 ZNF557Q8N988 423 aaPredicted RBP14.5□□□□□ -0.09
LDLR-201ENST00000252444 PRPF31Q8WWY3 499 aaKnown RBP14.5□□□□□ -0.09
LDLR-201ENST00000252444 PORCNQ9H237 461 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 DPP3Q9NY33 737 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 ADAMTS1Q9UHI8 967 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 FARP1Q9Y4F1 1045 aaPredicted RBP14.5□□□□□ -0.09
LDLR-201ENST00000252444 N4BP2Q86UW6 1770 aaPredicted RBP14.5□□□□□ -0.09
LDLR-201ENST00000252444 ZBBXA8MT70 800 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 CAND2O75155 1236 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 S100BP04271 92 aaPredicted RBP14.5□□□□□ -0.09
LDLR-201ENST00000252444 KLRC1P26715 233 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 SARSP49591 514 aaKnown RBP14.5□□□□□ -0.09
LDLR-201ENST00000252444 RAD51Q06609 339 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 CENPUQ71F23 418 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 MTMR8Q96EF0 704 aa14.5□□□□□ -0.09
LDLR-201ENST00000252444 CNOT10Q9H9A5 744 aaKnown RBP14.5□□□□□ -0.09
LDLR-201ENST00000252444 TTC26A0AVF1 554 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 MEIS2O14770 477 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 CYTH3O43739 400 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 AMHP03971 560 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 CYP24A1Q07973 514 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 IRF6O14896 467 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 F9P00740 461 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 HMGCRP04035 888 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 PSMD6Q15008 389 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 BMT2Q1RMZ1 405 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 KIAA1755Q5JYT7 1200 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 RASGRP2Q7LDG7 609 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 SH3RF1Q7Z6J0 888 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 ARHGAP24Q8N264 748 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 MAFO75444 373 aaPredicted RBP14.49□□□□□ -0.09
LDLR-201ENST00000252444 CPP00450 1065 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 RNASE9P60153 205 aaKnown RBP14.49□□□□□ -0.09
LDLR-201ENST00000252444 CUL2Q13617 745 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 NFE2Q16621 373 aaPredicted RBP14.49□□□□□ -0.09
LDLR-201ENST00000252444 AFG1LQ8WV93 481 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 ADGRG1Q9Y653 693 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 MAST2Q6P0Q8 1798 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 TARSL2A2RTX5 802 aaKnown RBP14.49□□□□□ -0.09
LDLR-201ENST00000252444 DTNBO60941 627 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 SLITRK3O94933 977 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 CTNNA1P35221 906 aaKnown RBP14.49□□□□□ -0.09
LDLR-201ENST00000252444 DR1Q01658 176 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 APBB2Q92870 758 aa14.49□□□□□ -0.09
LDLR-201ENST00000252444 INPP4AQ96PE3 977 aaPredicted RBP14.49□□□□□ -0.09
LDLR-201ENST00000252444 DDX60Q8IY21 1712 aaKnown RBP14.49□□□□□ -0.09
LDLR-201ENST00000252444 RNF219Q5W0B1 726 aaPredicted RBP14.48□□□□□ -0.09
LDLR-201ENST00000252444 CPLX4Q7Z7G2 160 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 FAM71BQ8TC56 605 aa14.48□□□□□ -0.09
LDLR-201ENST00000252444 HPDLQ96IR7 371 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms