RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 BFARQ9NZS9 450 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 NVLO15381 856 aaKnown RBP13.48□□□□□ -0.25
USP40-201ENST00000251722 PDHBP11177 359 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 VEGFAP15692 232 aaPredicted RBP13.48□□□□□ -0.25
USP40-201ENST00000251722 OCA2Q04671 838 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 ADAT2Q7Z6V5 191 aaKnown RBP13.48□□□□□ -0.25
USP40-201ENST00000251722 ASIC4Q96FT7 647 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 NDEL1Q9GZM8 345 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 UVRAGQ9P2Y5 699 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 CFAP69A5D8W1 941 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 SFI1A8K8P3 1242 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 LARGE1O95461 756 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 PDHA1P08559 390 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 EPHX2P34913 555 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 EZH2Q15910 746 aaKnown RBP13.47□□□□□ -0.25
USP40-201ENST00000251722 NAA35Q5VZE5 725 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 TBC1D1Q86TI0 1168 aaPredicted RBP13.47□□□□□ -0.25
USP40-201ENST00000251722 CHMP6Q96FZ7 201 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 RASGRF2O14827 1237 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 CYP2C8P10632 490 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 FXR2P51116 673 aaKnown RBP eCLIP13.47□□□□□ -0.25
USP40-201ENST00000251722 CYP27A1Q02318 531 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 ZNF235Q14590 738 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 CYFIP1Q7L576 1253 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 FMR1NBQ8N0W7 255 aaPredicted RBP13.47□□□□□ -0.25
USP40-201ENST00000251722 SRBD1Q8N5C6 995 aaKnown RBP13.47□□□□□ -0.25
USP40-201ENST00000251722 GBA2Q9HCG7 927 aaPredicted RBP13.47□□□□□ -0.25
USP40-201ENST00000251722 PCDHB7Q9Y5E2 793 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 GSTA4O15217 222 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 TDP2O95551 362 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 CAP2P40123 477 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 ZMYND12Q9H0C1 365 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 PPCSQ9HAB8 311 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 CYP2C9P11712 490 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 GTF2H3Q13889 308 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 CDO1Q16878 200 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 BBS9Q3SYG4 887 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 SDE2Q6IQ49 451 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 SUN2Q9UH99 717 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 FER1L4A9Z1Z3 1794 aa13.47□□□□□ -0.25
USP40-201ENST00000251722 RTN2O75298 545 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 AP1G2O75843 785 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 GYS1P13807 737 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 CCND1P24385 295 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 EEF1DP29692 281 aaKnown RBP13.46□□□□□ -0.25
USP40-201ENST00000251722 OAZ1P54368 228 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 SNX1Q13596 522 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 FOPNLQ96NB1 174 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 MRGBPQ9NV56 204 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 PRCPP42785 496 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 CTCFP49711 727 aaPredicted RBP13.46□□□□□ -0.25
USP40-201ENST00000251722 PPP6R3Q5H9R7 873 aaPredicted RBP13.46□□□□□ -0.25
USP40-201ENST00000251722 OPTNQ96CV9 577 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 COQ7Q99807 217 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 POLE3Q9NRF9 147 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 PDP2Q9P2J9 529 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 MTSS1O43312 755 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 AHCYL1O43865 530 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 NR1D1P20393 614 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 ROR1Q01973 937 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 FKBP1CQ5VVH2 108 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 INTS5Q6P9B9 1019 aaKnown RBP13.46□□□□□ -0.25
USP40-201ENST00000251722 MCUQ8NE86 351 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.46□□□□□ -0.25
USP40-201ENST00000251722 GMCL1Q96IK5 515 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 ADAMTS1Q9UHI8 967 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 KIF1AQ12756 1690 aa13.46□□□□□ -0.25
USP40-201ENST00000251722 ZNF197O14709 1029 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 SLC2A3P11169 496 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 BCAR1P56945 870 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 DRAP1Q14919 205 aaPredicted RBP13.46□□□□□ -0.26
USP40-201ENST00000251722 TMED2Q15363 201 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 RFFLQ8WZ73 363 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 PLEKHA5Q9HAU0 1116 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 ABHD10Q9NUJ1 306 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 E7ENQ6 273 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 KCNA4P22459 653 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 GRIK1P39086 918 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 C9orf131Q5VYM1 1079 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 CAPN12Q6ZSI9 719 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 TRIM67Q6ZTA4 783 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 TRIM74Q86UV6 250 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 TRIM73Q86UV7 250 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 NRBF2Q96F24 287 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 CFAP36Q96G28 342 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 NDUFA13Q9P0J0 144 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 DSEQ9UL01 958 aa13.46□□□□□ -0.26
USP40-201ENST00000251722 SETD1BQ9UPS6 1966 aaKnown RBP13.45□□□□□ -0.26
USP40-201ENST00000251722 TSPAN9O75954 239 aa13.45□□□□□ -0.26
USP40-201ENST00000251722 MYO1DO94832 1006 aa13.45□□□□□ -0.26
USP40-201ENST00000251722 CYP2B6P20813 491 aa13.45□□□□□ -0.26
USP40-201ENST00000251722 TRAPPC11Q7Z392 1133 aa13.45□□□□□ -0.26
USP40-201ENST00000251722 DNERQ8NFT8 737 aa13.45□□□□□ -0.26
USP40-201ENST00000251722 USP13Q92995 863 aaPredicted RBP13.45□□□□□ -0.26
USP40-201ENST00000251722 BHMTQ93088 406 aa13.45□□□□□ -0.26
USP40-201ENST00000251722 NUP85Q9BW27 656 aa13.45□□□□□ -0.26
USP40-201ENST00000251722 TEX12Q9BXU0 123 aa13.45□□□□□ -0.26
USP40-201ENST00000251722 HSPBP1Q9NZL4 362 aa13.45□□□□□ -0.26
USP40-201ENST00000251722 APOL1O14791 398 aa13.45□□□□□ -0.26
USP40-201ENST00000251722 FTCDO95954 541 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms