RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 PREX2Q70Z35 1606 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 C19orf81C9J6K1 198 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 ABCE1P61221 599 aaKnown RBP14.29□□□□□ -0.12
SF3A1-201ENST00000215793 SNRPFP62306 86 aaKnown RBP14.29□□□□□ -0.12
SF3A1-201ENST00000215793 FOXD4Q12950 439 aaPredicted RBP14.29□□□□□ -0.12
SF3A1-201ENST00000215793 NR1I3Q14994 352 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 RABGAP1LQ5R372 815 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 E4F1Q66K89 784 aaPredicted RBP14.29□□□□□ -0.12
SF3A1-201ENST00000215793 LMBRD2Q68DH5 695 aaPredicted RBP14.29□□□□□ -0.12
SF3A1-201ENST00000215793 TRAPPC11Q7Z392 1133 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 PARP9Q8IXQ6 854 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 MED15Q96RN5 788 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 MRGBPQ9NV56 204 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 F5H423 210 aaPredicted RBP14.29□□□□□ -0.12
SF3A1-201ENST00000215793 KCNN4O15554 427 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 LCP1P13796 627 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 MDH1P40925 334 aaKnown RBP14.29□□□□□ -0.12
SF3A1-201ENST00000215793 SERPINB9P50453 376 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 SESN2P58004 480 aaPredicted RBP14.29□□□□□ -0.12
SF3A1-201ENST00000215793 FMR1Q06787 632 aaKnown RBP eCLIP14.29□□□□□ -0.122e-6■□□□□ 11.2
SF3A1-201ENST00000215793 STK4Q13043 487 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 NCOA4Q13772 614 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 SNRNP35Q16560 246 aaKnown RBP14.29□□□□□ -0.12
SF3A1-201ENST00000215793 ARHGAP18Q8N392 663 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 DACH2Q96NX9 599 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 OLFM3Q96PB7 478 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 MAP3K14Q99558 947 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 KDM4CQ9H3R0 1056 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 ARHGAP26Q9UNA1 814 aa14.29□□□□□ -0.12
SF3A1-201ENST00000215793 MAGEB2O15479 319 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 HIC1Q14526 733 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 PPHLN1Q8NEY8 458 aaKnown RBP14.28□□□□□ -0.12
SF3A1-201ENST00000215793 KRT35Q92764 455 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 KIF2CQ99661 725 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 SMARCAD1Q9H4L7 1026 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 KIF17Q9P2E2 1029 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 AFF2P51816 1311 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 HDAC4P56524 1084 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 ACCSLQ4AC99 568 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 CCDC90BQ9GZT6 254 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 PCDHB2Q9Y5E7 798 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 SPAG6O75602 509 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 CCZ1BP86790 482 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 CCZ1P86791 482 aaPredicted RBP14.28□□□□□ -0.12
SF3A1-201ENST00000215793 LAMB3Q13751 1172 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 HPS3Q969F9 1004 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 STAMBPL1Q96FJ0 436 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 ZNRF3Q9ULT6 936 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 PIN4Q9Y237 131 aaKnown RBP14.28□□□□□ -0.12
SF3A1-201ENST00000215793 SNX9Q9Y5X1 595 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 DFFAO00273 331 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 P4HA2O15460 535 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 DNAJC6O75061 913 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 APRTP07741 180 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 GFAPP14136 432 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 FXR1P51114 621 aaKnown RBP eCLIP14.28□□□□□ -0.12
SF3A1-201ENST00000215793 RAD23BP54727 409 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 GUCY1A3Q02108 690 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 BAATQ14032 418 aaPredicted RBP14.28□□□□□ -0.12
SF3A1-201ENST00000215793 GRAMD4Q6IC98 578 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 SH3KBP1Q96B97 665 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 ARHGEF26Q96DR7 871 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 IRX2Q9BZI1 471 aaPredicted RBP14.28□□□□□ -0.12
SF3A1-201ENST00000215793 CASS4Q9NQ75 786 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 PITPNM2Q9BZ72 1349 aa14.28□□□□□ -0.12
SF3A1-201ENST00000215793 ZNF609O15014 1411 aa14.27□□□□□ -0.12
SF3A1-201ENST00000215793 CRB1P82279 1406 aa14.27□□□□□ -0.12
SF3A1-201ENST00000215793 MAFGO15525 162 aa14.27□□□□□ -0.12
SF3A1-201ENST00000215793 HHIPL2Q6UWX4 724 aa14.27□□□□□ -0.12
SF3A1-201ENST00000215793 RBBP8NLQ8NC74 664 aaPredicted RBP14.27□□□□□ -0.12
SF3A1-201ENST00000215793 APPL2Q8NEU8 664 aa14.27□□□□□ -0.12
SF3A1-201ENST00000215793 RIT2Q99578 217 aa14.27□□□□□ -0.12
SF3A1-201ENST00000215793 RUBCNLQ9H714 662 aa14.27□□□□□ -0.12
SF3A1-201ENST00000215793 MYMKA6NI61 221 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 CSF1RP07333 972 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 NR3C2P08235 984 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 PGM1P36871 562 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 ZC3H7BQ9UGR2 993 aaKnown RBP14.27□□□□□ -0.13
SF3A1-201ENST00000215793 KDM6AO15550 1401 aaPredicted RBP14.27□□□□□ -0.13
SF3A1-201ENST00000215793 NPHP3-ACAD11A0A0J9YXS1 232 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 TCP11X1B4DZS4 312 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 RFC5P40937 340 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 ACOT2P49753 483 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 MTMR2Q13614 643 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 CUL3Q13618 768 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 ANO4Q32M45 955 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 CCNI2Q6ZMN8 369 aaPredicted RBP14.27□□□□□ -0.13
SF3A1-201ENST00000215793 ANKMY2Q8IV38 441 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 TSPAN17Q96FV3 270 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 PPP1R2P1Q96PQ5 205 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 EPN3Q9H201 632 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 RANBP17Q9H2T7 1088 aaKnown RBP14.27□□□□□ -0.13
SF3A1-201ENST00000215793 RAB6BQ9NRW1 208 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 RNF181Q9P0P0 153 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 A0A1W2PQJ5 194 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 IQCA1LA6NCM1 817 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 FAM205CA6NFA0 338 aa14.27□□□□□ -0.13
SF3A1-201ENST00000215793 EIF3DO15371 548 aaKnown RBP eCLIP14.27□□□□□ -0.13
SF3A1-201ENST00000215793 MEFVO15553 781 aaPredicted RBP14.27□□□□□ -0.13
SF3A1-201ENST00000215793 PDHA1P08559 390 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms