RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	APM1	Q00776	475 aa	Predicted RBP	4.67	□□□□□ -1.66
UBP9	YER098W	SOR2	Q07786	357 aa		4.67	□□□□□ -1.66
UBP9	YER098W	GPM2	Q12008	311 aa		4.67	□□□□□ -1.66
UBP9	YER098W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.67	□□□□□ -1.66	not detected
UBP9	YER098W	RRP42	Q12277	265 aa	Predicted RBP	4.67	□□□□□ -1.66
UBP9	YER098W	YLR099W-A	Q3E798	87 aa		4.67	□□□□□ -1.66
UBP9	YER098W	VPS63	O13549	108 aa		4.66	□□□□□ -1.66
UBP9	YER098W	YOL163W	P0CF20	169 aa		4.66	□□□□□ -1.66
UBP9	YER098W	ASP3-2	P0CX77	362 aa		4.66	□□□□□ -1.66
UBP9	YER098W	ASP3-3	P0CX78	362 aa		4.66	□□□□□ -1.66
UBP9	YER098W	ASP3-4	P0CX79	362 aa		4.66	□□□□□ -1.66
UBP9	YER098W	ASP3-1	P0CZ17	362 aa		4.66	□□□□□ -1.66
UBP9	YER098W	SAM1	P10659	382 aa	Known RBP	4.66	□□□□□ -1.66
UBP9	YER098W	AMD1	P15274	810 aa	Known RBP	4.66	□□□□□ -1.66
UBP9	YER098W	SAG1	P20840	650 aa		4.66	□□□□□ -1.66
UBP9	YER098W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	4.66	□□□□□ -1.66	not detected
UBP9	YER098W	MRPL28	P36527	147 aa		4.66	□□□□□ -1.66
UBP9	YER098W	DTR1	P38125	572 aa		4.66	□□□□□ -1.66
UBP9	YER098W	RRN10	P38204	145 aa		4.66	□□□□□ -1.66
UBP9	YER098W	BMT5	P40493	336 aa		4.66	□□□□□ -1.66
UBP9	YER098W	IRC7	P43623	340 aa		4.66	□□□□□ -1.66
UBP9	YER098W	IBA57	P47158	497 aa		4.66	□□□□□ -1.66
UBP9	YER098W	BOP2	Q06150	570 aa		4.66	□□□□□ -1.66
UBP9	YER098W	SRN2	Q99176	213 aa		4.66	□□□□□ -1.66
UBP9	YER098W	MATALPHA1	P0CY06	175 aa		4.66	□□□□□ -1.66
UBP9	YER098W	HMLALPHA1	P0CY07	175 aa		4.66	□□□□□ -1.66
UBP9	YER098W	SEC22	P22214	214 aa		4.66	□□□□□ -1.66
UBP9	YER098W	ATG15	P25641	520 aa		4.66	□□□□□ -1.66
UBP9	YER098W	MRPL15	P36523	253 aa		4.66	□□□□□ -1.66
UBP9	YER098W	CAT5	P41735	233 aa		4.66	□□□□□ -1.66
UBP9	YER098W	UFE1	P41834	346 aa		4.66	□□□□□ -1.66
UBP9	YER098W	COS10	P52924	374 aa		4.66	□□□□□ -1.66
UBP9	YER098W	YGL185C	P53100	379 aa		4.66	□□□□□ -1.66
UBP9	YER098W	SUN4	P53616	420 aa		4.66	□□□□□ -1.66
UBP9	YER098W	FRE4	P53746	719 aa		4.66	□□□□□ -1.66
UBP9	YER098W	FMP41	P53889	259 aa	Known RBP	4.66	□□□□□ -1.66
UBP9	YER098W	MET31	Q03081	177 aa		4.66	□□□□□ -1.66
UBP9	YER098W	RDL1	Q12305	139 aa	Known RBP	4.66	□□□□□ -1.66
UBP9	YER098W	PSF1	Q12488	208 aa		4.66	□□□□□ -1.66
UBP9	YER098W	HIS1	P00498	297 aa	Known RBP	4.65	□□□□□ -1.66
UBP9	YER098W	MTF1	P14908	341 aa	Known RBP	4.65	□□□□□ -1.66
UBP9	YER098W	ZRC1	P20107	442 aa		4.65	□□□□□ -1.66
UBP9	YER098W	CDC50	P25656	391 aa		4.65	□□□□□ -1.66
UBP9	YER098W	SDH4	P37298	181 aa		4.65	□□□□□ -1.66
UBP9	YER098W	PHO88	P38264	188 aa	Predicted RBP	4.65	□□□□□ -1.66
UBP9	YER098W	RTC2	P38279	296 aa		4.65	□□□□□ -1.66
UBP9	YER098W	HAT2	P39984	401 aa		4.65	□□□□□ -1.66
UBP9	YER098W	PHB2	P50085	310 aa		4.65	□□□□□ -1.66
UBP9	YER098W	YGL114W	P53134	725 aa		4.65	□□□□□ -1.66
UBP9	YER098W	CWC27	Q02770	301 aa		4.65	□□□□□ -1.66
UBP9	YER098W	OST6	Q03723	332 aa		4.65	□□□□□ -1.66
UBP9	YER098W	IPK1	Q06667	281 aa		4.65	□□□□□ -1.66
UBP9	YER098W	MRX4	Q12467	430 aa		4.65	□□□□□ -1.66
UBP9	YER098W	MRPL23	Q12487	163 aa	Predicted RBP	4.65	□□□□□ -1.66
UBP9	YER098W	COX5A	P00424	153 aa		4.65	□□□□□ -1.67
UBP9	YER098W	CDC43	P18898	376 aa		4.65	□□□□□ -1.67
UBP9	YER098W	TIP1	P27654	210 aa	Predicted RBP	4.65	□□□□□ -1.67
UBP9	YER098W	DEG1	P31115	442 aa	Known RBP	4.65	□□□□□ -1.67
UBP9	YER098W	SNC2	P33328	115 aa		4.65	□□□□□ -1.67
UBP9	YER098W	SAY1	P53324	424 aa		4.65	□□□□□ -1.67
UBP9	YER098W	KTR6	P54070	446 aa		4.65	□□□□□ -1.67
UBP9	YER098W	CDC14	Q00684	551 aa		4.65	□□□□□ -1.67
UBP9	YER098W	YPL014W	Q02606	381 aa		4.65	□□□□□ -1.67
UBP9	YER098W	STD1	Q02794	444 aa		4.65	□□□□□ -1.67
UBP9	YER098W	AKR2	Q12013	749 aa		4.65	□□□□□ -1.67
UBP9	YER098W	RRI1	Q12468	440 aa		4.65	□□□□□ -1.67
UBP9	YER098W	YIL134C-A	Q45U18	67 aa		4.65	□□□□□ -1.67
UBP9	YER098W	MSF1	P08425	469 aa		4.64	□□□□□ -1.67
UBP9	YER098W	SEC62	P21825	274 aa		4.64	□□□□□ -1.67
UBP9	YER098W	MRP17	P28778	131 aa		4.64	□□□□□ -1.67
UBP9	YER098W	SHE1	P38200	338 aa		4.64	□□□□□ -1.67
UBP9	YER098W	QDR3	P38227	689 aa		4.64	□□□□□ -1.67
UBP9	YER098W	ALG8	P40351	577 aa		4.64	□□□□□ -1.67
UBP9	YER098W	POG1	P40473	351 aa		4.64	□□□□□ -1.67
UBP9	YER098W	SAS2	P40963	338 aa		4.64	□□□□□ -1.67
UBP9	YER098W	SNM1	P40993	198 aa		4.64	□□□□□ -1.67
UBP9	YER098W	PFS2	P42841	465 aa	Known RBP	4.64	□□□□□ -1.67
UBP9	YER098W	LOH1	P47055	219 aa		4.64	□□□□□ -1.67
UBP9	YER098W	TIS11	P47977	285 aa		4.64	□□□□□ -1.67
UBP9	YER098W	AVT4	P50944	713 aa		4.64	□□□□□ -1.67
UBP9	YER098W	GPI15	P53961	229 aa		4.64	□□□□□ -1.67
UBP9	YER098W	IRC15	Q02733	499 aa		4.64	□□□□□ -1.67
UBP9	YER098W	CWC21	Q03375	135 aa	Known RBP	4.64	□□□□□ -1.67
UBP9	YER098W	RDR1	Q08904	546 aa		4.64	□□□□□ -1.67
UBP9	YER098W	STT4	P37297	1900 aa		4.64	□□□□□ -1.67
UBP9	YER098W	RPL9A	P05738	191 aa	Known RBP	4.63	□□□□□ -1.67
UBP9	YER098W	CDC7	P06243	507 aa		4.63	□□□□□ -1.67
UBP9	YER098W	FUN19	P28003	413 aa	Predicted RBP	4.63	□□□□□ -1.67
UBP9	YER098W	SEC17	P32602	292 aa		4.63	□□□□□ -1.67
UBP9	YER098W	REC114	P32841	428 aa		4.63	□□□□□ -1.67
UBP9	YER098W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	4.63	□□□□□ -1.67	not detected
UBP9	YER098W	SHG1	P38337	142 aa		4.63	□□□□□ -1.67
UBP9	YER098W	YJR011C	P47086	261 aa	Predicted RBP	4.63	□□□□□ -1.67
UBP9	YER098W	RPL9B	P51401	191 aa	Known RBP	4.63	□□□□□ -1.67
UBP9	YER098W	MPA43	P53583	542 aa	Predicted RBP	4.63	□□□□□ -1.67
UBP9	YER098W	TPS1	Q00764	495 aa	Known RBP	4.63	□□□□□ -1.67
UBP9	YER098W	MZM1	Q03429	123 aa	Predicted RBP	4.63	□□□□□ -1.67
UBP9	YER098W	YLR446W	Q06204	433 aa		4.63	□□□□□ -1.67
UBP9	YER098W	CDD1	Q06549	142 aa		4.63	□□□□□ -1.67
UBP9	YER098W	ADH3	P07246	375 aa	Known RBP	4.63	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 9.8 ms