RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 ORC2Q13416 577 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-218ENST00000640036 TMED2Q15363 201 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 SYTL3Q4VX76 610 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 EFCAB3Q8N7B9 438 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 MLKLQ8NB16 471 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 B3GALNT2Q8NCR0 500 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 SETD7Q8WTS6 366 aaKnown RBP5.33□□□□□ -1.56
SCN1A-218ENST00000640036 CASP10Q92851 521 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 TMEM143Q96AN5 459 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 ARHGEF26Q96DR7 871 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 LRRC46Q96FV0 321 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 SCYL1Q96KG9 808 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 NUDCD1Q96RS6 583 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 DCLK3Q9C098 648 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 FOXP1Q9H334 677 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-218ENST00000640036 ASIC3Q9UHC3 531 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 BCL9O00512 1426 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 ORC4O43929 436 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 LUC7L3O95232 432 aaKnown RBP5.33□□□□□ -1.56
SCN1A-218ENST00000640036 SDHBP21912 280 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 INPP1P49441 399 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 ACTR2P61160 394 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 AP1B1Q10567 949 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 TWF1Q12792 350 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 NME3Q13232 169 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 MTSS1LQ765P7 747 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 TXNRD3Q86VQ6 643 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 AFAP1L1Q8TED9 768 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 DYDC2Q96IM9 177 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 L3MBTL3Q96JM7 780 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-218ENST00000640036 DRC3Q9H069 523 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 VPS16Q9H269 839 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 TLR8Q9NR97 1041 aaKnown RBP5.33□□□□□ -1.56
SCN1A-218ENST00000640036 PCDHB5Q9Y5E4 795 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 RIC1Q4ADV7 1423 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 DLC1Q96QB1 1528 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 E5RI56 91 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 SLC16A4O15374 487 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 RHOBTB3O94955 611 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 BROXQ5VW32 411 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 LRRC8DQ7L1W4 858 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 PHACTR4Q8IZ21 702 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 KCTD6Q8NC69 237 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 FBXO44Q9H4M3 255 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 Q9H521 79 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 NLRC4Q9NPP4 1024 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 RGL1Q9NZL6 768 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 JRKLQ9Y4A0 524 aa5.33□□□□□ -1.56
SCN1A-218ENST00000640036 MAP2P11137 1827 aaKnown RBP5.33□□□□□ -1.56
SCN1A-218ENST00000640036 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 SERPINB6P35237 376 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 AARSP49588 968 aaKnown RBP eCLIP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 SETDB1Q15047 1291 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 TBCCQ15814 346 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 TAF1BQ53T94 588 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 SZRD1Q7Z422 152 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 RFX6Q8HWS3 928 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 ACER1Q8TDN7 264 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 SLC9A7Q96T83 725 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 COBLO75128 1261 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 ADH1CP00326 375 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 LHX1P48742 406 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 KPNA2P52292 529 aaKnown RBP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 FKBP3Q00688 224 aaKnown RBP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 USP4Q13107 963 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 CCINQ13939 588 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 CDO1Q16878 200 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 VPS39Q96JC1 886 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 MRIQ9BWK5 157 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 SPATA6Q9NWH7 488 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 KLK14Q9P0G3 267 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 GPN3Q9UHW5 284 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 KIF13AQ9H1H9 1805 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 PPRC1Q5VV67 1664 aaKnown RBP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 NEXMIFQ5QGS0 1516 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 SYNRGQ9UMZ2 1314 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 GOLGA8IPA6NC78 632 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 GOLGA8JA6NMD2 632 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 IGKV5-2P06315 115 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 MAPK9P45984 424 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 PAPOLAP51003 745 aaKnown RBP5.32□□□□□ -1.56
SCN1A-218ENST00000640036 DEUP1Q05D60 604 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 ZNF394Q53GI3 561 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 DAB2IPQ5VWQ8 1189 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 CHPFQ8IZ52 775 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 LZICQ8WZA0 190 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 CCDC3Q9BQI4 270 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 MXRA8Q9BRK3 442 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 EHD4Q9H223 541 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 TUFT1Q9NNX1 390 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 BAG5Q9UL15 447 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 NRKQ7Z2Y5 1582 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 A0A087WZ62 844 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 A0A0D9SFI3 127 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 SUN1O94901 812 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 SAT1P21673 171 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 HTR1BP28222 390 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 TM4SF1P30408 202 aa5.32□□□□□ -1.56
SCN1A-218ENST00000640036 RAP1GDS1P52306 607 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms