RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 USTQ9Y2C2 406 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 GDAQ9Y2T3 454 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 CLIC4Q9Y696 253 aa12.78□□□□□ -0.36
CLN3-257ENST00000637110 OTOGLQ3ZCN5 2332 aa12.77□□□□□ -0.36
CLN3-257ENST00000637110 NPHP3-ACAD11A0A0J9YXS1 232 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 C2CD2LO14523 706 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 SLC16A4O15374 487 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 STX6O43752 255 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 B4GALT3O60512 393 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 CLASP2O75122 1294 aaKnown RBP12.77□□□□□ -0.37
CLN3-257ENST00000637110 CTSAP10619 480 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 MARCKSP29966 332 aaPredicted RBP12.77□□□□□ -0.37
CLN3-257ENST00000637110 MATR3P43243 847 aaKnown RBP eCLIP12.77□□□□□ -0.37
CLN3-257ENST00000637110 GRIK3Q13003 919 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 STRN3Q13033 797 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 RESTQ13127 1097 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 DCAF4L1Q3SXM0 396 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 HYIQ5T013 277 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 EEF1DP3Q658K8 133 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 KIAA1841Q6NSI8 718 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 COLGALT2Q8IYK4 626 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 EMILIN2Q9BXX0 1053 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 ZBP1Q9H171 429 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 ZHX3Q9H4I2 956 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 C17orf75Q9HAS0 396 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 MRPL17Q9NRX2 175 aaKnown RBP12.77□□□□□ -0.37
CLN3-257ENST00000637110 STK39Q9UEW8 545 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 RBM19Q9Y4C8 960 aaKnown RBP12.77□□□□□ -0.37
CLN3-257ENST00000637110 PHLPP2Q6ZVD8 1323 aa12.77□□□□□ -0.37
CLN3-257ENST00000637110 SLC26A4O43511 780 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 PI15O43692 258 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 TADA2AO75478 443 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 RECQL4O94761 1208 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 URODP06132 367 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 HARSP12081 509 aaKnown RBP12.76□□□□□ -0.37
CLN3-257ENST00000637110 PLS3P13797 630 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 RFX1P22670 979 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 GUCY2CP25092 1073 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 KLRC2P26717 231 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 TXLNAP40222 546 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 YARSP54577 528 aaKnown RBP12.76□□□□□ -0.37
CLN3-257ENST00000637110 SLC12A3P55017 1021 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 OSTNP61366 133 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 GRIN1Q05586 938 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 KARSQ15046 597 aaKnown RBP12.76□□□□□ -0.37
CLN3-257ENST00000637110 TMEM119Q4V9L6 283 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 SPECC1Q5M775 1068 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 ATAT1Q5SQI0 421 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 NT5DC1Q5TFE4 455 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 FOXD4L5Q5VV16 416 aaPredicted RBP12.76□□□□□ -0.37
CLN3-257ENST00000637110 GPBP1Q86WP2 473 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 DAW1Q8N136 415 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 SPRYD3Q8NCJ5 442 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 FOXD4L4Q8WXT5 416 aaPredicted RBP12.76□□□□□ -0.37
CLN3-257ENST00000637110 RABGGTAQ92696 567 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 SNX21Q969T3 373 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 ACSF2Q96CM8 615 aaPredicted RBP12.76□□□□□ -0.37
CLN3-257ENST00000637110 MRPL4Q9BYD3 311 aaKnown RBP12.76□□□□□ -0.37
CLN3-257ENST00000637110 ZSCAN16Q9H4T2 348 aaPredicted RBP12.76□□□□□ -0.37
CLN3-257ENST00000637110 TMEM134Q9H6X4 195 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 KCND2Q9NZV8 630 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 CCDC39Q9UFE4 941 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 MTMR6Q9Y217 621 aa12.76□□□□□ -0.37
CLN3-257ENST00000637110 CASTOR2A6NHX0 329 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 TDRD15B5MCY1 1934 aaKnown RBP12.75□□□□□ -0.37
CLN3-257ENST00000637110 STK25O00506 426 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 FAM13AO94988 1023 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 EDN1P05305 212 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 THP07101 528 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 NPR3P17342 541 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 PLCG1P19174 1290 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 MAPK7Q13164 816 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 TDGQ13569 410 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 MCM6Q14566 821 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 ST3GAL2Q16842 350 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 RSPO4Q2I0M5 234 aaPredicted RBP12.75□□□□□ -0.37
CLN3-257ENST00000637110 ZNF568Q3ZCX4 644 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 SIX5Q8N196 739 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 MYCT1Q8N699 235 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 RAD54LQ92698 747 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 BICD1Q96G01 975 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 CCDC94Q9BW85 323 aaPredicted RBP12.75□□□□□ -0.37
CLN3-257ENST00000637110 TARS2Q9BW92 718 aaKnown RBP12.75□□□□□ -0.37
CLN3-257ENST00000637110 DZANK1Q9NVP4 752 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 LARSQ9P2J5 1176 aaKnown RBP12.75□□□□□ -0.37
CLN3-257ENST00000637110 CDH22Q9UJ99 828 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 TNFSF13BQ9Y275 285 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 SSX2IPQ9Y2D8 614 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 HCFC2Q9Y5Z7 792 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 R4GN57 208 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 FRYLO94915 3013 aa12.75□□□□□ -0.37
CLN3-257ENST00000637110 SPTBN2O15020 2390 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 FANCMQ8IYD8 2048 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 INPPL1O15357 1258 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 TBCAO75347 108 aaKnown RBP12.74□□□□□ -0.37
CLN3-257ENST00000637110 SOD2P04179 222 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 GLUD2P49448 558 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 DSC1Q08554 894 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 TUSC3Q13454 348 aa12.74□□□□□ -0.37
CLN3-257ENST00000637110 STK38Q15208 465 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms