RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 OR5B17Q8NGF7 314 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 PPP1R16BQ96T49 567 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 MSTO1Q9BUK6 570 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 RBAKQ9NYW8 714 aaPredicted RBP11.42□□□□□ -0.58
CUX1-221ENST00000622516 COQ4Q9Y3A0 265 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 UMODL1Q5DID0 1318 aa11.42□□□□□ -0.58
CUX1-221ENST00000622516 EXTL3O43909 919 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 CSDE1O75534 798 aaKnown RBP11.41□□□□□ -0.58
CUX1-221ENST00000622516 STAM2O75886 525 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 GARTP22102 1010 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 NF2P35240 595 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 PSEN1P49768 467 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 OSTNP61366 133 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 CAPSQ13938 189 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 PSPC1Q8WXF1 523 aaKnown RBP11.41□□□□□ -0.58
CUX1-221ENST00000622516 EXOC4Q96A65 974 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 HVCN1Q96D96 273 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 PDGFCQ9NRA1 345 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 RBPJLQ9UBG7 517 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 TRPC6Q9Y210 931 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 ARID2Q68CP9 1835 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 TCRBV7S2A1N4TA0A589 114 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 CNMDO75829 334 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 HLA-DRAP01903 254 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 CYP2C8P10632 490 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 ICAM3P32942 547 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 ARL2P36404 184 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 PIK3CAP42336 1068 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 IREB2P48200 963 aaKnown RBP11.41□□□□□ -0.58
CUX1-221ENST00000622516 EAPPQ56P03 285 aaPredicted RBP11.41□□□□□ -0.58
CUX1-221ENST00000622516 RASGEF1CQ8N431 466 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 OR2W6PQ8NHA6 318 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 TMC2Q8TDI7 906 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 DDX1Q92499 740 aaKnown RBP11.41□□□□□ -0.58
CUX1-221ENST00000622516 CEP89Q96ST8 783 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 C1orf112Q9NSG2 853 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 PTPRFP10586 1907 aa11.41□□□□□ -0.58
CUX1-221ENST00000622516 GRIN3BO60391 1043 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 VNN1O95497 513 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 YBX3P16989 372 aaKnown RBP eCLIP11.4□□□□□ -0.583e-6■■■□□ 15.7
CUX1-221ENST00000622516 ECHS1P30084 290 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 CDR2Q01850 454 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 PAK2Q13177 524 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 C9orf131Q5VYM1 1079 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 RHOT2Q8IXI1 618 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 ZDHHC14Q8IZN3 488 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 MSL3Q8N5Y2 521 aaKnown RBP11.4□□□□□ -0.58
CUX1-221ENST00000622516 GOLGA6L1Q8N7Z2 621 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 ZNF564Q8TBZ8 553 aaPredicted RBP11.4□□□□□ -0.58
CUX1-221ENST00000622516 OPTNQ96CV9 577 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 RUFY1Q96T51 708 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 CENPHQ9H3R5 247 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 ZNF408Q9H9D4 720 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 APOBEC3GQ9HC16 384 aaKnown RBP11.4□□□□□ -0.58
CUX1-221ENST00000622516 MYPNQ86TC9 1320 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 A0A0G2JLL6 359 aaPredicted RBP11.4□□□□□ -0.58
CUX1-221ENST00000622516 GOLGA6CA6NDK9 693 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 NOP56O00567 594 aaKnown RBP11.4□□□□□ -0.58
CUX1-221ENST00000622516 SPOPO43791 374 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 HSF2BPO75031 334 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 GOLGA6DP0CG33 693 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 PYGMP11217 842 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 HNRNPH2P55795 449 aaKnown RBP11.4□□□□□ -0.58
CUX1-221ENST00000622516 RTP1P59025 263 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 PRRT2Q7Z6L0 340 aaPredicted RBP11.4□□□□□ -0.58
CUX1-221ENST00000622516 FMNL3Q8IVF7 1028 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 AFAP1L1Q8TED9 768 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 C18orf8Q96DM3 657 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 CDCA5Q96FF9 252 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 TAF1DQ9H5J8 278 aaPredicted RBP11.4□□□□□ -0.58
CUX1-221ENST00000622516 GOLGA6AQ9NYA3 693 aa11.4□□□□□ -0.58
CUX1-221ENST00000622516 CES2O00748 559 aa11.4□□□□□ -0.59
CUX1-221ENST00000622516 SOCS7O14512 581 aa11.4□□□□□ -0.59
CUX1-221ENST00000622516 CST3P01034 146 aaPredicted RBP11.4□□□□□ -0.59
CUX1-221ENST00000622516 C4BPAP04003 597 aaKnown RBP11.4□□□□□ -0.59
CUX1-221ENST00000622516 NAMPTP43490 491 aa11.4□□□□□ -0.59
CUX1-221ENST00000622516 ZACNQ401N2 412 aa11.4□□□□□ -0.59
CUX1-221ENST00000622516 ZNF394Q53GI3 561 aa11.4□□□□□ -0.59
CUX1-221ENST00000622516 TTMPQ5BVD1 217 aa11.4□□□□□ -0.59
CUX1-221ENST00000622516 FOXR1Q6PIV2 292 aa11.4□□□□□ -0.59
CUX1-221ENST00000622516 TMEM270Q6UE05 265 aa11.4□□□□□ -0.59
CUX1-221ENST00000622516 USP37Q86T82 979 aa11.4□□□□□ -0.59
CUX1-221ENST00000622516 RNF149Q8NC42 400 aa11.4□□□□□ -0.59
CUX1-221ENST00000622516 SEPT1Q8WYJ6 367 aa11.4□□□□□ -0.59
CUX1-221ENST00000622516 CAVIN3Q969G5 261 aa11.4□□□□□ -0.59
CUX1-221ENST00000622516 AZI2Q9H6S1 392 aa11.4□□□□□ -0.59
CUX1-221ENST00000622516 NRBP2Q9NSY0 501 aa11.4□□□□□ -0.59
CUX1-221ENST00000622516 CNOT8Q9UFF9 292 aaKnown RBP11.4□□□□□ -0.59
CUX1-221ENST00000622516 WDR90Q96KV7 1748 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 ZNFX1Q9P2E3 1918 aaKnown RBP11.39□□□□□ -0.59
CUX1-221ENST00000622516 PAPPA2Q9BXP8 1791 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 IGKV6D-21A0A0A0MT36 114 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 GJB6O95452 261 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 IGBP1P78318 339 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 WDR44Q5JSH3 913 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 CFAP58Q5T655 872 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 ERO1BQ86YB8 467 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 RHPN2Q8IUC4 686 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 PIK3R5Q8WYR1 880 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 CYFIP2Q96F07 1278 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms