RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 CCDC60Q8IWA6 550 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 SH3TC2Q8TF17 1288 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 EDEM3Q9BZQ6 932 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 RRN3Q9NYV6 651 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 WASF2Q9Y6W5 498 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 CCDC78A2IDD5 438 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 ATF4P18848 351 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 GNAQP50148 359 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 NUDT2P50583 147 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 UBAP2LQ14157 1087 aaKnown RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 SLC5A9Q2M3M2 681 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 KDELC2Q7Z4H8 507 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 BBOF1Q8ND07 529 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 DISC1Q9NRI5 854 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 TROQ12816 1431 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 RNF225M0QZC1 329 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 DNALI1O14645 258 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 HIRAP54198 1017 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 NCKAP1LP55160 1127 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 SPIDRQ14159 915 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 KRT25Q7Z3Z0 450 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 WNK4Q96J92 1243 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 EFHD1Q9BUP0 239 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 HEY1Q9Y5J3 304 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 GOLGA8CPA6NN73 597 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 C6orf229H3BNL8 230 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 AQP5P55064 265 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 DYNLL1P63167 89 aaKnown RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 REXO1Q8N1G1 1221 aaKnown RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 IMPG2Q9BZV3 1241 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 PSTPIP2Q9H939 334 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 LRCH1Q9Y2L9 728 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 TNKSO95271 1327 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 TRIM49P0CI25 452 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 TRIM49CP0CI26 452 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 DMRTB1Q96MA1 342 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 IL1RAPL1Q9NZN1 696 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 BGNP21810 368 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 RPA3P35244 121 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 IREB2P48200 963 aaKnown RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 FAM186BQ8IYM0 893 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 TPCN2Q8NHX9 752 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 RANBP17Q9H2T7 1088 aaKnown RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 EFR3BQ9Y2G0 817 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 TRIM17Q9Y577 477 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 A8MV72 311 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 CCNE1P24864 410 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 NKX2-5P52952 324 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 TBC1D9BQ66K14 1250 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 THOC7Q6I9Y2 204 aaKnown RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 RIPOR1Q6ZS17 1223 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 USP38Q8NB14 1042 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 BAG5Q9UL15 447 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 ITM2BQ9Y287 266 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 KLHL33A6NCF5 533 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 TSPAN4O14817 238 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 KPNA1P52294 538 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 NME3Q13232 169 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 EPHA10Q5JZY3 1008 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 PIH1D3Q9NQM4 214 aaKnown RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 ACSS2Q9NR19 701 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 VPS51Q9UID3 782 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 HBS1LQ9Y450 684 aaKnown RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 USP17L3A6NCW0 530 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 USP17L4A6NCW7 530 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 K7ENM7 598 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 IDH3BO43837 385 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 DDX5P17844 614 aaKnown RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 ATP6V1C1P21283 382 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 AKR1D1P51857 326 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 C2CD6Q53TS8 623 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 MARK2Q7KZI7 788 aaKnown RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 USP17L1Q7RTZ2 530 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 COA7Q96BR5 231 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 C6orf62Q9GZU0 229 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 DCLRE1BQ9H816 532 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 SACM1LQ9NTJ5 587 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 ZSWIM5Q9P217 1185 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 SPEF1Q9Y4P9 236 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 KCNA2P16389 499 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 DDR1Q08345 913 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 PAPD7Q5XG87 772 aaKnown RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 CNDP1Q96KN2 507 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 DENND2AQ9ULE3 1009 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 NAALADL1Q9UQQ1 740 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 RIMBP2O15034 1052 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 RNMTO43148 476 aaKnown RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 PSMG1O95456 288 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 FAM86B2P0C5J1 330 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 SRGNP10124 158 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 EIF4BP23588 611 aaKnown RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 TSGA10IPQ3SY00 556 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 PPP6R3Q5H9R7 873 aaPredicted RBP5.31□□□□□ -1.56
VPS13D-214ENST00000620676 NECAB2Q7Z6G3 386 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 BEGAINQ9BUH8 593 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 RNF38Q9H0F5 515 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 WDR35Q9P2L0 1181 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 GAPVD1Q14C86 1478 aa5.31□□□□□ -1.56
VPS13D-214ENST00000620676 FOXN3O00409 490 aaPredicted RBP5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms