RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 TSPAN18Q96SJ8 248 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 ASB7Q9H672 318 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 PARP2Q9UGN5 583 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 PCDHB7Q9Y5E2 793 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 TTC3P53804 2025 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 MEIS3P2A8K0S8 358 aa15.58■□□□□ 0.08
UPF1-211ENST00000600868 LACTBL1A8MY62 500 aa15.58■□□□□ 0.08
UPF1-211ENST00000600868 INPPL1O15357 1258 aa15.58■□□□□ 0.08
UPF1-211ENST00000600868 MEFVO15553 781 aaPredicted RBP15.58■□□□□ 0.08
UPF1-211ENST00000600868 CDK11BP21127 795 aaKnown RBP15.58■□□□□ 0.08
UPF1-211ENST00000600868 VAMP7P51809 220 aa15.58■□□□□ 0.08
UPF1-211ENST00000600868 WDR5P61964 334 aaKnown RBP15.58■□□□□ 0.08
UPF1-211ENST00000600868 CLDN10P78369 228 aa15.58■□□□□ 0.08
UPF1-211ENST00000600868 PPP2R3AQ06190 1150 aa15.58■□□□□ 0.08
UPF1-211ENST00000600868 BFSP1Q12934 665 aa15.58■□□□□ 0.08
UPF1-211ENST00000600868 HSP90AA4PQ58FG1 418 aa15.58■□□□□ 0.08
UPF1-211ENST00000600868 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.58■□□□□ 0.08
UPF1-211ENST00000600868 NPAS4Q8IUM7 802 aa15.58■□□□□ 0.08
UPF1-211ENST00000600868 ANKRD20A12PQ8NF67 263 aa15.58■□□□□ 0.08
UPF1-211ENST00000600868 HERVK_113Q902F9 699 aa15.58■□□□□ 0.08
UPF1-211ENST00000600868 LPPQ93052 612 aa15.58■□□□□ 0.08
UPF1-211ENST00000600868 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.58■□□□□ 0.081e-6■■□□□ 13.6
UPF1-211ENST00000600868 APOL6Q9BWW8 343 aa15.58■□□□□ 0.08
UPF1-211ENST00000600868 RSAD1Q9HA92 442 aa15.58■□□□□ 0.08
UPF1-211ENST00000600868 CNTN3Q9P232 1028 aa15.58■□□□□ 0.08
UPF1-211ENST00000600868 CITO14578 2027 aa15.58■□□□□ 0.08
UPF1-211ENST00000600868 RALGAPA2Q2PPJ7 1873 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 LRRC10BA6NIK2 292 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 HOXA2O43364 376 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 AMHP03971 560 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 ATP1A3P13637 1013 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 MAGEA10P43363 369 aaPredicted RBP15.57■□□□□ 0.08
UPF1-211ENST00000600868 MTIF2P46199 727 aaKnown RBP15.57■□□□□ 0.08
UPF1-211ENST00000600868 WNT7BP56706 349 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 OTOP2Q7RTS6 562 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 NT5DC4Q86YG4 428 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 CREBRFQ8IUR6 639 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 RNF169Q8NCN4 708 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 PLEKHO2Q8TD55 490 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 RSPH1Q8WYR4 309 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 TOP1MTQ969P6 601 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 CCDC127Q96BQ5 260 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 FNBP1Q96RU3 617 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 PDE11AQ9HCR9 933 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 RNF19AQ9NV58 838 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 LIMA1Q9UHB6 759 aaKnown RBP15.57■□□□□ 0.08
UPF1-211ENST00000600868 LRFN2Q9ULH4 789 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 DERAQ9Y315 318 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 C2CD2Q9Y426 696 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 ANK1P16157 1881 aa15.57■□□□□ 0.08
UPF1-211ENST00000600868 ARL5CA6NH57 179 aa15.56■□□□□ 0.08
UPF1-211ENST00000600868 OFD1O75665 1012 aa15.56■□□□□ 0.08
UPF1-211ENST00000600868 KCNE1P15382 129 aa15.56■□□□□ 0.08
UPF1-211ENST00000600868 KCNJ6P48051 423 aa15.56■□□□□ 0.08
UPF1-211ENST00000600868 KRT31Q15323 416 aa15.56■□□□□ 0.08
UPF1-211ENST00000600868 MAN2A1Q16706 1144 aa15.56■□□□□ 0.08
UPF1-211ENST00000600868 UVSSAQ2YD98 709 aa15.56■□□□□ 0.08
UPF1-211ENST00000600868 C1orf220Q5T0J3 134 aa15.56■□□□□ 0.08
UPF1-211ENST00000600868 WDR49Q8IV35 697 aa15.56■□□□□ 0.08
UPF1-211ENST00000600868 SLC35C1Q96A29 364 aa15.56■□□□□ 0.08
UPF1-211ENST00000600868 FAM212AQ96EL1 285 aa15.56■□□□□ 0.08
UPF1-211ENST00000600868 GAD1Q99259 594 aa15.56■□□□□ 0.08
UPF1-211ENST00000600868 CGRRF1Q99675 332 aa15.56■□□□□ 0.08
UPF1-211ENST00000600868 TUBGCP2Q9BSJ2 902 aa15.56■□□□□ 0.08
UPF1-211ENST00000600868 KLK14Q9P0G3 267 aa15.56■□□□□ 0.08
UPF1-211ENST00000600868 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.56■□□□□ 0.08
UPF1-211ENST00000600868 LRRIQ3A6PVS8 624 aaPredicted RBP15.55■□□□□ 0.08
UPF1-211ENST00000600868 STX10O60499 249 aa15.55■□□□□ 0.08
UPF1-211ENST00000600868 DLATP10515 647 aaKnown RBP15.55■□□□□ 0.08
UPF1-211ENST00000600868 IBSPP21815 317 aaPredicted RBP15.55■□□□□ 0.08
UPF1-211ENST00000600868 GTF2H1P32780 548 aa15.55■□□□□ 0.08
UPF1-211ENST00000600868 MLH1P40692 756 aa15.55■□□□□ 0.08
UPF1-211ENST00000600868 AP3M2P53677 418 aa15.55■□□□□ 0.08
UPF1-211ENST00000600868 DLG4P78352 724 aa15.55■□□□□ 0.08
UPF1-211ENST00000600868 DEFB103AP81534 67 aa15.55■□□□□ 0.08
UPF1-211ENST00000600868 ZBTB6Q15916 424 aa15.55■□□□□ 0.08
UPF1-211ENST00000600868 CLLU1OSQ5K130 101 aa15.55■□□□□ 0.08
UPF1-211ENST00000600868 RASIP1Q5U651 963 aa15.55■□□□□ 0.08
UPF1-211ENST00000600868 GLB1LQ6UWU2 654 aa15.55■□□□□ 0.08
UPF1-211ENST00000600868 APTXQ7Z2E3 356 aaKnown RBP15.55■□□□□ 0.08
UPF1-211ENST00000600868 GSTCDQ8NEC7 633 aa15.55■□□□□ 0.08
UPF1-211ENST00000600868 ZFP42Q96MM3 310 aa15.55■□□□□ 0.08
UPF1-211ENST00000600868 ZMAT2Q96NC0 199 aaKnown RBP15.55■□□□□ 0.08
UPF1-211ENST00000600868 RPS6KC1Q96S38 1066 aa15.55■□□□□ 0.08
UPF1-211ENST00000600868 POP1Q99575 1024 aaKnown RBP15.55■□□□□ 0.08
UPF1-211ENST00000600868 CXCL16Q9H2A7 254 aa15.55■□□□□ 0.08
UPF1-211ENST00000600868 MTIF3Q9H2K0 278 aaKnown RBP15.55■□□□□ 0.08
UPF1-211ENST00000600868 INTS13Q9NVM9 706 aa15.55■□□□□ 0.08
UPF1-211ENST00000600868 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.55■□□□□ 0.08
UPF1-211ENST00000600868 SMIM28A0A1B0GU29 152 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 ZBBXA8MT70 800 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 H0YGN5 161 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 PTGESO14684 152 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 TPM2P07951 284 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 NFICP08651 508 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 TRIM49P0CI25 452 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 TRIM49CP0CI26 452 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 FGFR1P11362 822 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 PRKCSHP14314 528 aaPredicted RBP15.54■□□□□ 0.08
UPF1-211ENST00000600868 TNNI1P19237 187 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms