RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 POMKQ9H5K3 350 aa13.33□□□□□ -0.28
LIG1-217ENST00000599165 GOLGA2P5Q9HBQ8 144 aa13.33□□□□□ -0.28
LIG1-217ENST00000599165 MRPL17Q9NRX2 175 aaKnown RBP13.33□□□□□ -0.28
LIG1-217ENST00000599165 RAPGEFL1Q9UHV5 662 aa13.33□□□□□ -0.28
LIG1-217ENST00000599165 ZNF318Q5VUA4 2279 aa13.33□□□□□ -0.28
LIG1-217ENST00000599165 SMIM28A0A1B0GU29 152 aa13.32□□□□□ -0.28
LIG1-217ENST00000599165 FAM86C2PA6NEL3 165 aa13.32□□□□□ -0.28
LIG1-217ENST00000599165 URODP06132 367 aa13.32□□□□□ -0.28
LIG1-217ENST00000599165 THP07101 528 aa13.32□□□□□ -0.28
LIG1-217ENST00000599165 OSTNP61366 133 aa13.32□□□□□ -0.28
LIG1-217ENST00000599165 RARS2Q5T160 578 aaKnown RBP13.32□□□□□ -0.28
LIG1-217ENST00000599165 SLC39A4Q6P5W5 647 aa13.32□□□□□ -0.28
LIG1-217ENST00000599165 ZPBP2Q6X784 338 aa13.32□□□□□ -0.28
LIG1-217ENST00000599165 HAUS6Q7Z4H7 955 aa13.32□□□□□ -0.28
LIG1-217ENST00000599165 LINC00301Q8NCQ3 95 aa13.32□□□□□ -0.28
LIG1-217ENST00000599165 FBXL18Q96ME1 805 aa13.32□□□□□ -0.28
LIG1-217ENST00000599165 LRFN3Q9BTN0 628 aa13.32□□□□□ -0.28
LIG1-217ENST00000599165 IKZF4Q9H2S9 585 aa13.32□□□□□ -0.28
LIG1-217ENST00000599165 ZSCAN16Q9H4T2 348 aaPredicted RBP13.32□□□□□ -0.28
LIG1-217ENST00000599165 STK39Q9UEW8 545 aa13.32□□□□□ -0.28
LIG1-217ENST00000599165 MUTYHQ9UIF7 546 aa13.32□□□□□ -0.28
LIG1-217ENST00000599165 MYMKA6NI61 221 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 TMEM189-UBE2V1I3L0A0 370 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 TOM1L1O75674 476 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 PAPLNO95428 1278 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 PIGRP01833 764 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 SRGAP2BP0DMP2 458 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 RPL17P18621 184 aaKnown RBP13.31□□□□□ -0.28
LIG1-217ENST00000599165 NMT1P30419 496 aaKnown RBP13.31□□□□□ -0.28
LIG1-217ENST00000599165 DDIT3P35638 169 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 CLCNKBP51801 687 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 MCL1Q07820 350 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 UPP1Q16831 310 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 SLC10A6Q3KNW5 377 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 HERC4Q5GLZ8 1057 aaPredicted RBP13.31□□□□□ -0.28
LIG1-217ENST00000599165 ZBTB41Q5SVQ8 909 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 LILRA6Q6PI73 481 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 PRSS55Q6UWB4 352 aaPredicted RBP13.31□□□□□ -0.28
LIG1-217ENST00000599165 GPR65Q8IYL9 337 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 DNAJC19Q96DA6 116 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 RPGRIP1Q96KN7 1286 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 POP1Q99575 1024 aaKnown RBP13.31□□□□□ -0.28
LIG1-217ENST00000599165 EMILIN2Q9BXX0 1053 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 DZANK1Q9NVP4 752 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 CNTN3Q9P232 1028 aa13.31□□□□□ -0.28
LIG1-217ENST00000599165 NOTCH4Q99466 2003 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 TISP43B9A030 160 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 ADAM12O43184 909 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 DCXO43602 365 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 GPR37L1O60883 481 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 TADA2AO75478 443 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 PPP1R37O75864 691 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 HARSP12081 509 aaKnown RBP13.3□□□□□ -0.28
LIG1-217ENST00000599165 KCNE1P15382 129 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 KLRC2P26717 231 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 TNFSF9P41273 254 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 SMTNP53814 917 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 ITIH3Q06033 890 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 BMS1Q14692 1282 aaKnown RBP13.3□□□□□ -0.28
LIG1-217ENST00000599165 NOLC1Q14978 699 aaKnown RBP eCLIP13.3□□□□□ -0.28
LIG1-217ENST00000599165 USP41Q3LFD5 358 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 TPRNQ4KMQ1 711 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 FOXD4L5Q5VV16 416 aaPredicted RBP13.3□□□□□ -0.28
LIG1-217ENST00000599165 KIAA1841Q6NSI8 718 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 TMC5Q6UXY8 1006 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 PPFIBP1Q86W92 1011 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 MYCT1Q8N699 235 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 LNX1Q8TBB1 728 aaPredicted RBP13.3□□□□□ -0.28
LIG1-217ENST00000599165 FOXD4L4Q8WXT5 416 aaPredicted RBP13.3□□□□□ -0.28
LIG1-217ENST00000599165 RIN2Q8WYP3 895 aaPredicted RBP13.3□□□□□ -0.28
LIG1-217ENST00000599165 C18orf25Q96B23 403 aaPredicted RBP13.3□□□□□ -0.28
LIG1-217ENST00000599165 CLSTN3Q9BQT9 956 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 CCDC94Q9BW85 323 aaPredicted RBP13.3□□□□□ -0.28
LIG1-217ENST00000599165 STRA6Q9BX79 667 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 C1QTNF1Q9BXJ1 281 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 PARVGQ9HBI0 331 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 LARSQ9P2J5 1176 aaKnown RBP13.3□□□□□ -0.28
LIG1-217ENST00000599165 ANKFY1Q9P2R3 1169 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 TFIP11Q9UBB9 837 aaKnown RBP13.3□□□□□ -0.28
LIG1-217ENST00000599165 STK17AQ9UEE5 414 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 TBX20Q9UMR3 447 aa13.3□□□□□ -0.28
LIG1-217ENST00000599165 SF3B1O75533 1304 aaKnown RBP eCLIP13.3□□□□□ -0.284e-6■■■■■ 34.5
LIG1-217ENST00000599165 ANKRD63C9JTQ0 380 aa13.29□□□□□ -0.28
LIG1-217ENST00000599165 I3L4J1 428 aa13.29□□□□□ -0.28
LIG1-217ENST00000599165 K7ENM7 598 aa13.29□□□□□ -0.28
LIG1-217ENST00000599165 TRAK2O60296 914 aa13.29□□□□□ -0.28
LIG1-217ENST00000599165 NR1I2O75469 434 aa13.29□□□□□ -0.28
LIG1-217ENST00000599165 FAM13AO94988 1023 aa13.29□□□□□ -0.28
LIG1-217ENST00000599165 SPATA31D3P0C874 917 aa13.29□□□□□ -0.28
LIG1-217ENST00000599165 MYBP10242 640 aa13.29□□□□□ -0.28
LIG1-217ENST00000599165 FGFR3P22607 806 aa13.29□□□□□ -0.28
LIG1-217ENST00000599165 SP100P23497 879 aaPredicted RBP13.29□□□□□ -0.28
LIG1-217ENST00000599165 BRCC3P46736 316 aa13.29□□□□□ -0.28
LIG1-217ENST00000599165 GTF2BQ00403 316 aa13.29□□□□□ -0.28
LIG1-217ENST00000599165 STRN3Q13033 797 aa13.29□□□□□ -0.28
LIG1-217ENST00000599165 E2F4Q16254 413 aa13.29□□□□□ -0.28
LIG1-217ENST00000599165 ZC2HC1CQ53FD0 456 aaPredicted RBP13.29□□□□□ -0.28
LIG1-217ENST00000599165 AXDND1Q5T1B0 1012 aaPredicted RBP13.29□□□□□ -0.28
LIG1-217ENST00000599165 FAM171A1Q5VUB5 890 aa13.29□□□□□ -0.28
LIG1-217ENST00000599165 RSPO2Q6UXX9 243 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms