RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 PLS1Q14651 629 aa13.04□□□□□ -0.32
LIG1-207ENST00000594759 RBM44Q6ZP01 1051 aaKnown RBP13.04□□□□□ -0.32
LIG1-207ENST00000594759 ANKRD23Q86SG2 305 aa13.04□□□□□ -0.32
LIG1-207ENST00000594759 RDH13Q8NBN7 331 aa13.04□□□□□ -0.32
LIG1-207ENST00000594759 PPP4R1Q8TF05 950 aa13.04□□□□□ -0.32
LIG1-207ENST00000594759 TRIM11Q96F44 468 aa13.04□□□□□ -0.32
LIG1-207ENST00000594759 PAIP1Q9H074 479 aaKnown RBP13.04□□□□□ -0.32
LIG1-207ENST00000594759 EURLQ9NYK6 297 aa13.04□□□□□ -0.32
LIG1-207ENST00000594759 NAGPAQ9UK23 515 aa13.04□□□□□ -0.32
LIG1-207ENST00000594759 PVALEFA0A1B0GWK0 134 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 GCNT3O95395 438 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 ESRRBO95718 433 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 LVRNQ6Q4G3 990 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 ISLR2Q6UXK2 745 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 DPP8Q6V1X1 898 aaPredicted RBP13.03□□□□□ -0.32
LIG1-207ENST00000594759 ECHDC2Q86YB7 292 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 IRF2BP1Q8IU81 584 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 CROCCP3Q8IVE0 287 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 SEPT12Q8IYM1 358 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 REXO1Q8N1G1 1221 aaKnown RBP13.03□□□□□ -0.32
LIG1-207ENST00000594759 PPP1R14BQ96C90 147 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 DNAJC1Q96KC8 554 aaKnown RBP13.03□□□□□ -0.32
LIG1-207ENST00000594759 KIF20BQ96Q89 1820 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 WDR46O15213 610 aaKnown RBP13.03□□□□□ -0.32
LIG1-207ENST00000594759 PTENP60484 403 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 TRMT5Q32P41 509 aaKnown RBP13.03□□□□□ -0.32
LIG1-207ENST00000594759 PNMA1Q8ND90 353 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 SCFD2Q8WU76 684 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 PPWD1Q96BP3 646 aaKnown RBP13.03□□□□□ -0.32
LIG1-207ENST00000594759 KLHL4Q9C0H6 718 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 PARVBQ9HBI1 364 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 SAR1AQ9NR31 198 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 EMILIN3Q9NT22 766 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 MYH10P35580 1976 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 PALM3A6NDB9 673 aaPredicted RBP13.03□□□□□ -0.32
LIG1-207ENST00000594759 A6NJR5 290 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 EPHB6O15197 1021 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 OCM2P0CE71 109 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 OCMP0CE72 109 aaPredicted RBP13.03□□□□□ -0.32
LIG1-207ENST00000594759 ITIH2P19823 946 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 OCRLQ01968 901 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 PPP2R5CQ13362 524 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 TAB3Q8N5C8 712 aaPredicted RBP13.03□□□□□ -0.32
LIG1-207ENST00000594759 CNBD2Q96M20 576 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 PHF24Q9UPV7 400 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 PYGMP11217 842 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 CRLF3Q8IUI8 442 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 DUSP9Q99956 384 aaKnown RBP13.03□□□□□ -0.32
LIG1-207ENST00000594759 CCSER1Q9C0I3 900 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 MAF1Q9H063 256 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 GID8Q9NWU2 228 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 DTNAQ9Y4J8 743 aa13.03□□□□□ -0.32
LIG1-207ENST00000594759 GOLGA8RI6L899 631 aa13.02□□□□□ -0.32
LIG1-207ENST00000594759 PENKP01210 267 aaPredicted RBP13.02□□□□□ -0.32
LIG1-207ENST00000594759 ACTN1P12814 892 aa13.02□□□□□ -0.32
LIG1-207ENST00000594759 RPL5P46777 297 aaKnown RBP13.02□□□□□ -0.32
LIG1-207ENST00000594759 TBC1D9BQ66K14 1250 aa13.02□□□□□ -0.32
LIG1-207ENST00000594759 C4orf50Q6ZRC1 276 aa13.02□□□□□ -0.32
LIG1-207ENST00000594759 NCCRP1Q6ZVX7 275 aaPredicted RBP13.02□□□□□ -0.32
LIG1-207ENST00000594759 SLC25A41Q8N5S1 370 aa13.02□□□□□ -0.32
LIG1-207ENST00000594759 TMCO5AQ8N6Q1 288 aa13.02□□□□□ -0.32
LIG1-207ENST00000594759 GIPC3Q8TF64 312 aa13.02□□□□□ -0.32
LIG1-207ENST00000594759 GJA10Q969M2 543 aa13.02□□□□□ -0.32
LIG1-207ENST00000594759 ECSITQ9BQ95 431 aa13.02□□□□□ -0.32
LIG1-207ENST00000594759 GRIP2Q9C0E4 1043 aa13.02□□□□□ -0.32
LIG1-207ENST00000594759 SALL4Q9UJQ4 1053 aa13.02□□□□□ -0.32
LIG1-207ENST00000594759 ATP11BQ9Y2G3 1177 aa13.02□□□□□ -0.32
LIG1-207ENST00000594759 GMEB1Q9Y692 573 aa13.02□□□□□ -0.32
LIG1-207ENST00000594759 CBFA2T3O75081 653 aa13.02□□□□□ -0.33
LIG1-207ENST00000594759 FKBP6O75344 327 aa13.02□□□□□ -0.33
LIG1-207ENST00000594759 NCF2P19878 526 aaPredicted RBP13.02□□□□□ -0.33
LIG1-207ENST00000594759 TUBP50607 506 aa13.02□□□□□ -0.33
LIG1-207ENST00000594759 TRIM16LQ309B1 348 aa13.02□□□□□ -0.33
LIG1-207ENST00000594759 LZTS2Q9BRK4 669 aa13.02□□□□□ -0.33
LIG1-207ENST00000594759 BARX2Q9UMQ3 279 aaPredicted RBP13.02□□□□□ -0.33
LIG1-207ENST00000594759 TDRKHQ9Y2W6 561 aaKnown RBP13.02□□□□□ -0.33
LIG1-207ENST00000594759 NOP56O00567 594 aaKnown RBP13.02□□□□□ -0.33
LIG1-207ENST00000594759 DDX3XO00571 662 aaKnown RBP eCLIP13.02□□□□□ -0.332e-12■■■□□ 16.8
LIG1-207ENST00000594759 GGPS1O95749 300 aa13.02□□□□□ -0.33
LIG1-207ENST00000594759 ITGA9Q13797 1035 aa13.02□□□□□ -0.33
LIG1-207ENST00000594759 ATG16L1Q676U5 607 aa13.02□□□□□ -0.33
LIG1-207ENST00000594759 TBC1D16Q8TBP0 767 aa13.02□□□□□ -0.33
LIG1-207ENST00000594759 NAALADL1Q9UQQ1 740 aa13.02□□□□□ -0.33
LIG1-207ENST00000594759 FER1L4A9Z1Z3 1794 aa13.02□□□□□ -0.33
LIG1-207ENST00000594759 GSG1L2A8MUP6 293 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 CFLARO15519 480 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 DLATP10515 647 aaKnown RBP13.01□□□□□ -0.33
LIG1-207ENST00000594759 INHBEP58166 350 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 ATP1A4Q13733 1029 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 MIGA2Q7L4E1 593 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 ATP8B4Q8TF62 1192 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 SPATA17Q96L03 361 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 SERPINI1Q99574 410 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 ARHGAP23Q9P227 1491 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 ALDH18A1P54886 795 aaKnown RBP13.01□□□□□ -0.33
LIG1-207ENST00000594759 KAZNQ674X7 775 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 GALNT4Q8N4A0 578 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 KLHL25Q9H0H3 589 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 WWP1Q9H0M0 922 aa13.01□□□□□ -0.33
LIG1-207ENST00000594759 STX18Q9P2W9 335 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms