RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 PARVGQ9HBI0 331 aa22.24■■□□□ 1.15
CLK3-225ENST00000569063 STK17AQ9UEE5 414 aa22.24■■□□□ 1.15
CLK3-225ENST00000569063 TEX28O15482 410 aa22.23■■□□□ 1.15
CLK3-225ENST00000569063 FAM13AO94988 1023 aa22.23■■□□□ 1.15
CLK3-225ENST00000569063 KRT18P05783 430 aaKnown RBP22.23■■□□□ 1.15
CLK3-225ENST00000569063 ALADP13716 330 aa22.23■■□□□ 1.15
CLK3-225ENST00000569063 TXLNAP40222 546 aa22.23■■□□□ 1.15
CLK3-225ENST00000569063 KRI1Q8N9T8 703 aaKnown RBP22.23■■□□□ 1.15
CLK3-225ENST00000569063 ZBTB45Q96K62 511 aaPredicted RBP22.23■■□□□ 1.15
CLK3-225ENST00000569063 FBXL18Q96ME1 805 aa22.23■■□□□ 1.15
CLK3-225ENST00000569063 ACAP3Q96P50 834 aa22.23■■□□□ 1.15
CLK3-225ENST00000569063 SF3B1O75533 1304 aaKnown RBP eCLIP22.23■■□□□ 1.15
CLK3-225ENST00000569063 MYH11P35749 1972 aa22.23■■□□□ 1.15
CLK3-225ENST00000569063 SMIM28A0A1B0GU29 152 aa22.22■■□□□ 1.15
CLK3-225ENST00000569063 KIF4AO95239 1232 aa22.22■■□□□ 1.15
CLK3-225ENST00000569063 C1RP00736 705 aa22.22■■□□□ 1.15
CLK3-225ENST00000569063 ADH1AP07327 375 aa22.22■■□□□ 1.15
CLK3-225ENST00000569063 HSP90AA1P07900 732 aaKnown RBP22.22■■□□□ 1.15
CLK3-225ENST00000569063 OSTNP61366 133 aa22.22■■□□□ 1.15
CLK3-225ENST00000569063 GLRA4Q5JXX5 417 aa22.22■■□□□ 1.15
CLK3-225ENST00000569063 RNF135Q8IUD6 432 aa22.22■■□□□ 1.15
CLK3-225ENST00000569063 B3GALT6Q96L58 329 aa22.22■■□□□ 1.15
CLK3-225ENST00000569063 NECTIN4Q96NY8 510 aa22.22■■□□□ 1.15
CLK3-225ENST00000569063 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22.22■■□□□ 1.15
CLK3-225ENST00000569063 FNIP2Q9P278 1114 aa22.22■■□□□ 1.15
CLK3-225ENST00000569063 TMEM189-UBE2V1I3L0A0 370 aa22.21■■□□□ 1.15
CLK3-225ENST00000569063 DCXO43602 365 aa22.21■■□□□ 1.15
CLK3-225ENST00000569063 TRAK2O60296 914 aa22.21■■□□□ 1.15
CLK3-225ENST00000569063 TBCAO75347 108 aaKnown RBP22.21■■□□□ 1.15
CLK3-225ENST00000569063 MCL1Q07820 350 aa22.21■■□□□ 1.15
CLK3-225ENST00000569063 NOLC1Q14978 699 aaKnown RBP eCLIP22.21■■□□□ 1.15
CLK3-225ENST00000569063 RRAGBQ5VZM2 374 aa22.21■■□□□ 1.15
CLK3-225ENST00000569063 C12orf76Q8N812 135 aaPredicted RBP22.21■■□□□ 1.15
CLK3-225ENST00000569063 LINC00301Q8NCQ3 95 aa22.21■■□□□ 1.15
CLK3-225ENST00000569063 SNX27Q96L92 541 aa22.21■■□□□ 1.15
CLK3-225ENST00000569063 UROC1Q96N76 676 aa22.21■■□□□ 1.15
CLK3-225ENST00000569063 ANKFY1Q9P2R3 1169 aa22.21■■□□□ 1.15
CLK3-225ENST00000569063 TBX20Q9UMR3 447 aa22.21■■□□□ 1.15
CLK3-225ENST00000569063 CLDN3O15551 220 aa22.2■■□□□ 1.14
CLK3-225ENST00000569063 GPR37L1O60883 481 aa22.2■■□□□ 1.14
CLK3-225ENST00000569063 KCNE1P15382 129 aa22.2■■□□□ 1.14
CLK3-225ENST00000569063 ABCD1P33897 745 aa22.2■■□□□ 1.14
CLK3-225ENST00000569063 MTHFRP42898 656 aa22.2■■□□□ 1.14
CLK3-225ENST00000569063 CREMQ03060 361 aa22.2■■□□□ 1.14
CLK3-225ENST00000569063 ELAVL2Q12926 359 aaKnown RBP22.2■■□□□ 1.14
CLK3-225ENST00000569063 UPP1Q16831 310 aa22.2■■□□□ 1.14
CLK3-225ENST00000569063 RARS2Q5T160 578 aaKnown RBP22.2■■□□□ 1.14
CLK3-225ENST00000569063 DCLRE1AQ6PJP8 1040 aa22.2■■□□□ 1.14
CLK3-225ENST00000569063 HASPINQ8TF76 798 aa22.2■■□□□ 1.14
CLK3-225ENST00000569063 RIN2Q8WYP3 895 aaPredicted RBP22.2■■□□□ 1.14
CLK3-225ENST00000569063 RPGRIP1Q96KN7 1286 aa22.2■■□□□ 1.14
CLK3-225ENST00000569063 RIPOR3Q96MK2 946 aa22.2■■□□□ 1.14
CLK3-225ENST00000569063 ZNF396Q96N95 335 aaPredicted RBP22.2■■□□□ 1.14
CLK3-225ENST00000569063 FIZ1Q96SL8 496 aa22.2■■□□□ 1.14
CLK3-225ENST00000569063 SFXN1Q9H9B4 322 aa22.2■■□□□ 1.14
CLK3-225ENST00000569063 SLC38A7Q9NVC3 462 aa22.2■■□□□ 1.14
CLK3-225ENST00000569063 CNTN3Q9P232 1028 aa22.2■■□□□ 1.14
CLK3-225ENST00000569063 DPP7Q9UHL4 492 aa22.2■■□□□ 1.14
CLK3-225ENST00000569063 K7ENM7 598 aa22.19■■□□□ 1.14
CLK3-225ENST00000569063 MEFVO15553 781 aaPredicted RBP22.19■■□□□ 1.14
CLK3-225ENST00000569063 PPP6R2O75170 966 aa22.19■■□□□ 1.14
CLK3-225ENST00000569063 PIGRP01833 764 aa22.19■■□□□ 1.14
CLK3-225ENST00000569063 CLCNKBP51801 687 aa22.19■■□□□ 1.14
CLK3-225ENST00000569063 STK38Q15208 465 aa22.19■■□□□ 1.14
CLK3-225ENST00000569063 HERC4Q5GLZ8 1057 aaPredicted RBP22.19■■□□□ 1.14
CLK3-225ENST00000569063 ATAT1Q5SQI0 421 aa22.19■■□□□ 1.14
CLK3-225ENST00000569063 KANK3Q6NY19 840 aa22.19■■□□□ 1.14
CLK3-225ENST00000569063 CCDC73Q6ZRK6 1079 aa22.19■■□□□ 1.14
CLK3-225ENST00000569063 BICD1Q96G01 975 aa22.19■■□□□ 1.14
CLK3-225ENST00000569063 ZMAT2Q96NC0 199 aaKnown RBP22.19■■□□□ 1.14
CLK3-225ENST00000569063 TTPALQ9BTX7 342 aa22.19■■□□□ 1.14
CLK3-225ENST00000569063 HAPLN2Q9GZV7 340 aa22.19■■□□□ 1.14
CLK3-225ENST00000569063 ZHX3Q9H4I2 956 aa22.19■■□□□ 1.14
CLK3-225ENST00000569063 C11orf16Q9NQ32 467 aa22.19■■□□□ 1.14
CLK3-225ENST00000569063 TFIP11Q9UBB9 837 aaKnown RBP22.19■■□□□ 1.14
CLK3-225ENST00000569063 CDH22Q9UJ99 828 aa22.19■■□□□ 1.14
CLK3-225ENST00000569063 SPTLC2O15270 562 aa22.18■■□□□ 1.14
CLK3-225ENST00000569063 B3GAT3O94766 335 aa22.18■■□□□ 1.14
CLK3-225ENST00000569063 GLUD1P00367 558 aa22.18■■□□□ 1.14
CLK3-225ENST00000569063 ZSCAN22P10073 491 aaPredicted RBP22.18■■□□□ 1.14
CLK3-225ENST00000569063 HARSP12081 509 aaKnown RBP22.18■■□□□ 1.14
CLK3-225ENST00000569063 GTF2BQ00403 316 aa22.18■■□□□ 1.14
CLK3-225ENST00000569063 SOX4Q06945 474 aaPredicted RBP22.18■■□□□ 1.14
CLK3-225ENST00000569063 SLC10A6Q3KNW5 377 aa22.18■■□□□ 1.14
CLK3-225ENST00000569063 TMEM31Q5JXX7 168 aa22.18■■□□□ 1.14
CLK3-225ENST00000569063 RTP2Q5QGT7 225 aa22.18■■□□□ 1.14
CLK3-225ENST00000569063 FAM171A1Q5VUB5 890 aa22.18■■□□□ 1.14
CLK3-225ENST00000569063 SV2BQ7L1I2 683 aa22.18■■□□□ 1.14
CLK3-225ENST00000569063 DDX12PQ92771 950 aa22.18■■□□□ 1.14
CLK3-225ENST00000569063 DDX27Q96GQ7 796 aaKnown RBP22.18■■□□□ 1.14
CLK3-225ENST00000569063 ST6GALNAC4Q9H4F1 302 aa22.18■■□□□ 1.14
CLK3-225ENST00000569063 POMKQ9H5K3 350 aa22.18■■□□□ 1.14
CLK3-225ENST00000569063 HNRNPDLO14979 420 aaKnown RBP22.17■■□□□ 1.14
CLK3-225ENST00000569063 YEATS4O95619 227 aa22.17■■□□□ 1.14
CLK3-225ENST00000569063 NMT1P30419 496 aaKnown RBP22.17■■□□□ 1.14
CLK3-225ENST00000569063 LIG4P49917 911 aa22.17■■□□□ 1.14
CLK3-225ENST00000569063 ELMSAN1Q6PJG2 1045 aa22.17■■□□□ 1.14
CLK3-225ENST00000569063 CD300LGQ6UXG3 332 aa22.17■■□□□ 1.14
CLK3-225ENST00000569063 TMC5Q6UXY8 1006 aa22.17■■□□□ 1.14
CLK3-225ENST00000569063 DYMQ7RTS9 669 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms