RNA–Protein interactions for RNA: ENST00000568586.5

RAB40C-211, Transcript of RAB40C, member RAS oncogene family, human

TSL 2

Gene RAB40C, Length 648 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB40C-211	ENST00000568586	RABGGTA	Q92696	567 aa		32.2	■■■□□ 2.75
RAB40C-211	ENST00000568586	FBXL18	Q96ME1	805 aa		32.2	■■■□□ 2.75
RAB40C-211	ENST00000568586	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	32.2	■■■□□ 2.75
RAB40C-211	ENST00000568586	FNIP2	Q9P278	1114 aa		32.2	■■■□□ 2.75
RAB40C-211	ENST00000568586	SF3B1	O75533	1304 aa	Known RBP eCLIP	32.2	■■■□□ 2.74	1e-6	■■■■■ 94.1
RAB40C-211	ENST00000568586	SMIM28	A0A1B0GU29	152 aa		32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	TMEM189-UBE2V1	I3L0A0	370 aa		32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	C2CD2L	O14523	706 aa		32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	KIF4A	O95239	1232 aa		32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	ADH1A	P07327	375 aa		32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	YARS	P54577	528 aa	Known RBP	32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	CEBPZ	Q03701	1054 aa	Known RBP	32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	MCL1	Q07820	350 aa		32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	DHX8	Q14562	1220 aa	Known RBP	32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	HERC4	Q5GLZ8	1057 aa	Predicted RBP	32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	KIAA1841	Q6NSI8	718 aa		32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	RNF135	Q8IUD6	432 aa		32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	ZBTB45	Q96K62	511 aa	Predicted RBP	32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	FIZ1	Q96SL8	496 aa		32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	TCHP	Q9BT92	498 aa		32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	APOL5	Q9BWW9	433 aa		32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	CCDC39	Q9UFE4	941 aa		32.19	■■■□□ 2.74
RAB40C-211	ENST00000568586	KCNE1	P15382	129 aa		32.18	■■■□□ 2.74
RAB40C-211	ENST00000568586	ZBTB33	Q86T24	672 aa		32.18	■■■□□ 2.74
RAB40C-211	ENST00000568586	KRI1	Q8N9T8	703 aa	Known RBP	32.18	■■■□□ 2.74
RAB40C-211	ENST00000568586	UROC1	Q96N76	676 aa		32.18	■■■□□ 2.74
RAB40C-211	ENST00000568586	ACAP3	Q96P50	834 aa		32.18	■■■□□ 2.74
RAB40C-211	ENST00000568586	FAM13A	O94988	1023 aa		32.17	■■■□□ 2.74
RAB40C-211	ENST00000568586	PAPLN	O95428	1278 aa		32.17	■■■□□ 2.74
RAB40C-211	ENST00000568586	PIGR	P01833	764 aa		32.17	■■■□□ 2.74
RAB40C-211	ENST00000568586	MTHFR	P42898	656 aa		32.17	■■■□□ 2.74
RAB40C-211	ENST00000568586	DCLRE1A	Q6PJP8	1040 aa		32.17	■■■□□ 2.74
RAB40C-211	ENST00000568586	MYCT1	Q8N699	235 aa		32.17	■■■□□ 2.74
RAB40C-211	ENST00000568586	C12orf76	Q8N812	135 aa	Predicted RBP	32.17	■■■□□ 2.74
RAB40C-211	ENST00000568586	LINC00301	Q8NCQ3	95 aa		32.17	■■■□□ 2.74
RAB40C-211	ENST00000568586	SNX27	Q96L92	541 aa		32.17	■■■□□ 2.74
RAB40C-211	ENST00000568586	SFXN1	Q9H9B4	322 aa		32.17	■■■□□ 2.74
RAB40C-211	ENST00000568586	CNTN3	Q9P232	1028 aa		32.17	■■■□□ 2.74
RAB40C-211	ENST00000568586	MEFV	O15553	781 aa	Predicted RBP	32.16	■■■□□ 2.74
RAB40C-211	ENST00000568586	TRAK2	O60296	914 aa		32.16	■■■□□ 2.74
RAB40C-211	ENST00000568586	CREM	Q03060	361 aa		32.16	■■■□□ 2.74
RAB40C-211	ENST00000568586	ELAVL2	Q12926	359 aa	Known RBP	32.16	■■■□□ 2.74
RAB40C-211	ENST00000568586	NOLC1	Q14978	699 aa	Known RBP eCLIP	32.16	■■■□□ 2.74
RAB40C-211	ENST00000568586	UPP1	Q16831	310 aa		32.16	■■■□□ 2.74
RAB40C-211	ENST00000568586	GLRA4	Q5JXX5	417 aa		32.16	■■■□□ 2.74
RAB40C-211	ENST00000568586	RARS2	Q5T160	578 aa	Known RBP	32.16	■■■□□ 2.74
RAB40C-211	ENST00000568586	HDAC7	Q8WUI4	952 aa		32.16	■■■□□ 2.74
RAB40C-211	ENST00000568586	B3GALT6	Q96L58	329 aa		32.16	■■■□□ 2.74
RAB40C-211	ENST00000568586	RIPOR3	Q96MK2	946 aa		32.16	■■■□□ 2.74
RAB40C-211	ENST00000568586	ZMAT2	Q96NC0	199 aa	Known RBP	32.16	■■■□□ 2.74
RAB40C-211	ENST00000568586	ST6GALNAC4	Q9H4F1	302 aa		32.16	■■■□□ 2.74
RAB40C-211	ENST00000568586	CDH22	Q9UJ99	828 aa		32.16	■■■□□ 2.74
RAB40C-211	ENST00000568586	TBX20	Q9UMR3	447 aa		32.16	■■■□□ 2.74
RAB40C-211	ENST00000568586	CLDN3	O15551	220 aa		32.15	■■■□□ 2.74
RAB40C-211	ENST00000568586	ABCD1	P33897	745 aa		32.15	■■■□□ 2.74
RAB40C-211	ENST00000568586	TXLNA	P40222	546 aa		32.15	■■■□□ 2.74
RAB40C-211	ENST00000568586	OSTN	P61366	133 aa		32.15	■■■□□ 2.74
RAB40C-211	ENST00000568586	TMEM31	Q5JXX7	168 aa		32.15	■■■□□ 2.74
RAB40C-211	ENST00000568586	RTP2	Q5QGT7	225 aa		32.15	■■■□□ 2.74
RAB40C-211	ENST00000568586	RRAGB	Q5VZM2	374 aa		32.15	■■■□□ 2.74
RAB40C-211	ENST00000568586	CD300LG	Q6UXG3	332 aa		32.15	■■■□□ 2.74
RAB40C-211	ENST00000568586	CMAS	Q8NFW8	434 aa	Predicted RBP	32.15	■■■□□ 2.74
RAB40C-211	ENST00000568586	RPGRIP1	Q96KN7	1286 aa		32.15	■■■□□ 2.74
RAB40C-211	ENST00000568586	RHOBTB2	Q9BYZ6	727 aa		32.15	■■■□□ 2.74
RAB40C-211	ENST00000568586	HAPLN2	Q9GZV7	340 aa		32.15	■■■□□ 2.74
RAB40C-211	ENST00000568586	SLC38A7	Q9NVC3	462 aa		32.15	■■■□□ 2.74
RAB40C-211	ENST00000568586	DPP7	Q9UHL4	492 aa		32.15	■■■□□ 2.74
RAB40C-211	ENST00000568586	TRIP11	Q15643	1979 aa		32.15	■■■□□ 2.74
RAB40C-211	ENST00000568586	KRT18	P05783	430 aa	Known RBP	32.14	■■■□□ 2.74
RAB40C-211	ENST00000568586	GTF2B	Q00403	316 aa		32.14	■■■□□ 2.74
RAB40C-211	ENST00000568586	ATAT1	Q5SQI0	421 aa		32.14	■■■□□ 2.74
RAB40C-211	ENST00000568586	LILRA6	Q6PI73	481 aa		32.14	■■■□□ 2.74
RAB40C-211	ENST00000568586	GPR149	Q86SP6	731 aa		32.14	■■■□□ 2.74
RAB40C-211	ENST00000568586	RIN2	Q8WYP3	895 aa	Predicted RBP	32.14	■■■□□ 2.74
RAB40C-211	ENST00000568586	PIK3R5	Q8WYR1	880 aa		32.14	■■■□□ 2.74
RAB40C-211	ENST00000568586	LRFN3	Q9BTN0	628 aa		32.14	■■■□□ 2.74
RAB40C-211	ENST00000568586	TTPAL	Q9BTX7	342 aa		32.14	■■■□□ 2.74
RAB40C-211	ENST00000568586	POMK	Q9H5K3	350 aa		32.14	■■■□□ 2.74
RAB40C-211	ENST00000568586	PPP6R2	O75170	966 aa		32.13	■■■□□ 2.73
RAB40C-211	ENST00000568586	TBCA	O75347	108 aa	Known RBP	32.13	■■■□□ 2.73
RAB40C-211	ENST00000568586	GLUD1	P00367	558 aa		32.13	■■■□□ 2.73
RAB40C-211	ENST00000568586	CLCNKB	P51801	687 aa		32.13	■■■□□ 2.73
RAB40C-211	ENST00000568586	SOX4	Q06945	474 aa	Predicted RBP	32.13	■■■□□ 2.73
RAB40C-211	ENST00000568586	SLC10A6	Q3KNW5	377 aa		32.13	■■■□□ 2.73
RAB40C-211	ENST00000568586	FAM171A1	Q5VUB5	890 aa		32.13	■■■□□ 2.73
RAB40C-211	ENST00000568586	KANK3	Q6NY19	840 aa		32.13	■■■□□ 2.73
RAB40C-211	ENST00000568586	C15orf39	Q6ZRI6	1047 aa		32.13	■■■□□ 2.73
RAB40C-211	ENST00000568586	HASPIN	Q8TF76	798 aa		32.13	■■■□□ 2.73
RAB40C-211	ENST00000568586	DDX27	Q96GQ7	796 aa	Known RBP	32.13	■■■□□ 2.73
RAB40C-211	ENST00000568586	ZNF396	Q96N95	335 aa	Predicted RBP	32.13	■■■□□ 2.73
RAB40C-211	ENST00000568586	ANKFY1	Q9P2R3	1169 aa		32.13	■■■□□ 2.73
RAB40C-211	ENST00000568586	MUTYH	Q9UIF7	546 aa		32.13	■■■□□ 2.73
RAB40C-211	ENST00000568586	CYP26C1	Q6V0L0	522 aa		32.12	■■■□□ 2.73
RAB40C-211	ENST00000568586	CCDC73	Q6ZRK6	1079 aa		32.12	■■■□□ 2.73
RAB40C-211	ENST00000568586	LNX1	Q8TBB1	728 aa	Predicted RBP	32.12	■■■□□ 2.73
RAB40C-211	ENST00000568586	PLEKHA5	Q9HAU0	1116 aa		32.12	■■■□□ 2.73
RAB40C-211	ENST00000568586		K7ENM7	598 aa		32.11	■■■□□ 2.73
RAB40C-211	ENST00000568586	FAM189A1	O60320	539 aa		32.11	■■■□□ 2.73
RAB40C-211	ENST00000568586	B3GAT3	O94766	335 aa		32.11	■■■□□ 2.73
RAB40C-211	ENST00000568586	ZSCAN22	P10073	491 aa	Predicted RBP	32.11	■■■□□ 2.73

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