RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 SYCP3Q8IZU3 236 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 PDILTQ8N807 584 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 SMRP1Q8NCR6 262 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 GSTCDQ8NEC7 633 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 CASP10Q92851 521 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 KCNN1Q92952 543 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 DHX58Q96C10 678 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 DDX27Q96GQ7 796 aaKnown RBP4.78□□□□□ -1.64
SNX1-205ENST00000559339 SPATA32Q96LK8 384 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 UROC1Q96N76 676 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 TSPAN18Q96SJ8 248 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 PANK2Q9BZ23 570 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 TNMDQ9H2S6 317 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 ST6GALNAC4Q9H4F1 302 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 TMEM206Q9H813 350 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 PLEKHA5Q9HAU0 1116 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 MAGEF1Q9HAY2 307 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 PTPRHQ9HD43 1115 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 OLFML3Q9NRN5 406 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.78□□□□□ -1.64
SNX1-205ENST00000559339 PRKAG3Q9UGI9 489 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 CD207Q9UJ71 328 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 ADAM28Q9UKQ2 775 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 USP20Q9Y2K6 914 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 SIP14410 1827 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 TRANK1O15050 2925 aa4.78□□□□□ -1.64
SNX1-205ENST00000559339 GBF1Q92538 1859 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 SPTBN5Q9NRC6 3674 aaKnown RBP4.77□□□□□ -1.65
SNX1-205ENST00000559339 MUC3AQ02505 3323 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 SMIM28A0A1B0GU29 152 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 GRXCR2A6NFK2 248 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 CASTOR2A6NHX0 329 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 MYMKA6NI61 221 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 TTLL13PA6NNM8 815 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 HIDE1A8MVS5 230 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 TULP1O00294 542 aaPredicted RBP4.77□□□□□ -1.65
SNX1-205ENST00000559339 POLR2DO15514 142 aaKnown RBP4.77□□□□□ -1.65
SNX1-205ENST00000559339 CLTAP09496 248 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 PROZP22891 400 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 NMT1P30419 496 aaKnown RBP4.77□□□□□ -1.65
SNX1-205ENST00000559339 RPL9P32969 192 aaKnown RBP4.77□□□□□ -1.65
SNX1-205ENST00000559339 GTF2F1P35269 517 aaKnown RBP eCLIP4.77□□□□□ -1.65
SNX1-205ENST00000559339 PSEN1P49768 467 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 GTF2BQ00403 316 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 PPP2R3AQ06190 1150 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 COASYQ13057 564 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 SMAD4Q13485 552 aaKnown RBP4.77□□□□□ -1.65
SNX1-205ENST00000559339 PKP1Q13835 747 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 SMAD2Q15796 467 aaKnown RBP4.77□□□□□ -1.65
SNX1-205ENST00000559339 CLUL1Q15846 466 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 GLRA4Q5JXX5 417 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 EEF1DP3Q658K8 133 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 ADALQ6DHV7 355 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 LLGL2Q6P1M3 1020 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 FUT10Q6P4F1 479 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 DCLRE1AQ6PJP8 1040 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 TAS1R3Q7RTX0 852 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 ZNF720Q7Z2F6 126 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 ADGRD2Q7Z7M1 963 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 SFR1Q86XK3 245 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 CEP57Q86XR8 500 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 MAP4K3Q8IVH8 894 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 CD302Q8IX05 232 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 GPR65Q8IYL9 337 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 GJD3Q8N144 294 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.77□□□□□ -1.65
SNX1-205ENST00000559339 POMGNT1Q8WZA1 660 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 HVCN1Q96D96 273 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 SNX27Q96L92 541 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 NECTIN4Q96NY8 510 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 ACCSQ96QU6 501 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 TTPALQ9BTX7 342 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 MSTO1Q9BUK6 570 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 ZBP1Q9H171 429 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 CDT1Q9H211 546 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 RPF1Q9H9Y2 349 aaKnown RBP4.77□□□□□ -1.65
SNX1-205ENST00000559339 PANK4Q9NVE7 773 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 DZANK1Q9NVP4 752 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 MIOSQ9NXC5 875 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 CNTN3Q9P232 1028 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 RCOR1Q9UKL0 485 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 KCNH3Q9ULD8 1083 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 BARX2Q9UMQ3 279 aaPredicted RBP4.77□□□□□ -1.65
SNX1-205ENST00000559339 PCDHA7Q9UN72 937 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 R3HCC1Q9Y3T6 440 aaKnown RBP4.77□□□□□ -1.65
SNX1-205ENST00000559339 NUB1Q9Y5A7 615 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 PCDHGC5Q9Y5F6 944 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 HCFC2Q9Y5Z7 792 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 TTC28Q96AY4 2481 aa4.77□□□□□ -1.65
SNX1-205ENST00000559339 PTPRSQ13332 1948 aa4.76□□□□□ -1.65
SNX1-205ENST00000559339 MYO7AQ13402 2215 aa4.76□□□□□ -1.65
SNX1-205ENST00000559339 CUL9Q8IWT3 2517 aa4.76□□□□□ -1.65
SNX1-205ENST00000559339 A0A0B4J269 797 aa4.76□□□□□ -1.65
SNX1-205ENST00000559339 ARHGEF37A1IGU5 675 aa4.76□□□□□ -1.65
SNX1-205ENST00000559339 TMEM189-UBE2V1I3L0A0 370 aa4.76□□□□□ -1.65
SNX1-205ENST00000559339 PODXLO00592 558 aa4.76□□□□□ -1.65
SNX1-205ENST00000559339 PTGESO14684 152 aa4.76□□□□□ -1.65
SNX1-205ENST00000559339 KIAA0391O15091 583 aaKnown RBP4.76□□□□□ -1.65
SNX1-205ENST00000559339 OGTO15294 1046 aa4.76□□□□□ -1.65
SNX1-205ENST00000559339 LINC01565O15544 149 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms