RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 B3GALT6Q96L58 329 aa13.09□□□□□ -0.31
SRP54-203ENST00000553544 ZFP42Q96MM3 310 aa13.09□□□□□ -0.31
SRP54-203ENST00000553544 EIF2AQ9BY44 585 aaKnown RBP13.09□□□□□ -0.31
SRP54-203ENST00000553544 MTF2Q9Y483 593 aaPredicted RBP13.09□□□□□ -0.31
SRP54-203ENST00000553544 F8W810 466 aa13.08□□□□□ -0.32
SRP54-203ENST00000553544 TBC1D4O60343 1298 aa13.08□□□□□ -0.32
SRP54-203ENST00000553544 CD2BP2O95400 341 aaKnown RBP13.08□□□□□ -0.32
SRP54-203ENST00000553544 HNRNPA1P09651 372 aaKnown RBP eCLIP13.08□□□□□ -0.32
SRP54-203ENST00000553544 RPL17P18621 184 aaKnown RBP13.08□□□□□ -0.32
SRP54-203ENST00000553544 U2AF2P26368 475 aaKnown RBP eCLIP13.08□□□□□ -0.32
SRP54-203ENST00000553544 MCM7P33993 719 aa13.08□□□□□ -0.32
SRP54-203ENST00000553544 MXD4Q14582 209 aaPredicted RBP13.08□□□□□ -0.32
SRP54-203ENST00000553544 XKR9Q5GH70 373 aa13.08□□□□□ -0.32
SRP54-203ENST00000553544 FERMT3Q86UX7 667 aa13.08□□□□□ -0.32
SRP54-203ENST00000553544 NOSTRINQ8IVI9 506 aa13.08□□□□□ -0.32
SRP54-203ENST00000553544 TPH2Q8IWU9 490 aa13.08□□□□□ -0.32
SRP54-203ENST00000553544 ZBTB44Q8NCP5 570 aa13.08□□□□□ -0.32
SRP54-203ENST00000553544 FGF13Q92913 245 aa13.08□□□□□ -0.32
SRP54-203ENST00000553544 TBC1D32Q96NH3 1257 aa13.08□□□□□ -0.32
SRP54-203ENST00000553544 RTKNQ9BST9 563 aa13.08□□□□□ -0.32
SRP54-203ENST00000553544 APOL6Q9BWW8 343 aa13.08□□□□□ -0.32
SRP54-203ENST00000553544 TRIM6Q9C030 488 aaPredicted RBP13.08□□□□□ -0.32
SRP54-203ENST00000553544 CSRNP2Q9H175 543 aa13.08□□□□□ -0.32
SRP54-203ENST00000553544 ANKEF1Q9NU02 776 aa13.08□□□□□ -0.32
SRP54-203ENST00000553544 ADAM28Q9UKQ2 775 aa13.08□□□□□ -0.32
SRP54-203ENST00000553544 CDV3Q9UKY7 258 aaKnown RBP13.08□□□□□ -0.32
SRP54-203ENST00000553544 HES2Q9Y543 173 aa13.08□□□□□ -0.32
SRP54-203ENST00000553544 XYLBO75191 536 aa13.07□□□□□ -0.32
SRP54-203ENST00000553544 SPATA31C1P0DKV0 1188 aa13.07□□□□□ -0.32
SRP54-203ENST00000553544 XRCC6P12956 609 aaKnown RBP eCLIP13.07□□□□□ -0.32
SRP54-203ENST00000553544 ATP2B1P20020 1258 aa13.07□□□□□ -0.32
SRP54-203ENST00000553544 TRAPPC10P48553 1259 aa13.07□□□□□ -0.32
SRP54-203ENST00000553544 PTENP60484 403 aa13.07□□□□□ -0.32
SRP54-203ENST00000553544 PPM1LQ5SGD2 360 aa13.07□□□□□ -0.32
SRP54-203ENST00000553544 LIN9Q5TKA1 542 aa13.07□□□□□ -0.32
SRP54-203ENST00000553544 C4orf32Q8N8J7 132 aa13.07□□□□□ -0.32
SRP54-203ENST00000553544 TMX3Q96JJ7 454 aa13.07□□□□□ -0.32
SRP54-203ENST00000553544 FAM126AQ9BYI3 521 aaPredicted RBP13.07□□□□□ -0.32
SRP54-203ENST00000553544 XPNPEP1Q9NQW7 623 aa13.07□□□□□ -0.32
SRP54-203ENST00000553544 GTF3C3Q9Y5Q9 886 aa13.07□□□□□ -0.32
SRP54-203ENST00000553544 KMT2BQ9UMN6 2715 aaPredicted RBP13.07□□□□□ -0.32
SRP54-203ENST00000553544 DCDC2BA2VCK2 349 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 INO80B-WBP1J3KQ70 363 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 TSPAN1O60635 241 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 LILRB5O75023 590 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 CD72P21854 359 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 AKAP5P24588 427 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 RARRES1P49788 294 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 TOB1P50616 345 aaPredicted RBP13.06□□□□□ -0.32
SRP54-203ENST00000553544 NTHL1P78549 312 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 POU5F1BQ06416 359 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 TFDP1Q14186 410 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 EMC2Q15006 297 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 ZNF174Q15697 407 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 TTC38Q5R3I4 469 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 PRSS55Q6UWB4 352 aaPredicted RBP13.06□□□□□ -0.32
SRP54-203ENST00000553544 ZNF852Q6ZMS4 543 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 GSTCDQ8NEC7 633 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 RABGGTAQ92696 567 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 CLDN23Q96B33 292 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 CPB2Q96IY4 423 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 TTPALQ9BTX7 342 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 EPC1Q9H2F5 836 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 LTB4R2Q9NPC1 389 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 FBXW11Q9UKB1 542 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 USP18Q9UMW8 372 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 POLIQ9UNA4 740 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 SMG5Q9UPR3 1016 aaKnown RBP13.06□□□□□ -0.32
SRP54-203ENST00000553544 MRPS17Q9Y2R5 130 aaKnown RBP13.06□□□□□ -0.32
SRP54-203ENST00000553544 DOCK8Q8NF50 2099 aa13.06□□□□□ -0.32
SRP54-203ENST00000553544 CCL16O15467 120 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 DGAT1O75907 488 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 C8AP07357 584 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 OR52Z1P0C646 297 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 HOXA9P31269 272 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 RPS9P46781 194 aaKnown RBP13.05□□□□□ -0.32
SRP54-203ENST00000553544 MCM2P49736 904 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 GRIK3Q13003 919 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 HSP90AA2PQ14568 343 aaPredicted RBP13.05□□□□□ -0.32
SRP54-203ENST00000553544 UVSSAQ2YD98 709 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 RTP2Q5QGT7 225 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 CATSPER3Q86XQ3 398 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 CEP57Q86XR8 500 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 NELL1Q92832 810 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 MTRQ99707 1265 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 CLSTN3Q9BQT9 956 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 POLR3CQ9BUI4 534 aaPredicted RBP13.05□□□□□ -0.32
SRP54-203ENST00000553544 TUFT1Q9NNX1 390 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 BMP2KQ9NSY1 1161 aaPredicted RBP13.05□□□□□ -0.32
SRP54-203ENST00000553544 PARP2Q9UGN5 583 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 KCNH3Q9ULD8 1083 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 SF3B1O75533 1304 aaKnown RBP eCLIP13.05□□□□□ -0.32
SRP54-203ENST00000553544 CACNA1GO43497 2377 aa13.05□□□□□ -0.32
SRP54-203ENST00000553544 TDRD15B5MCY1 1934 aaKnown RBP13.04□□□□□ -0.32
SRP54-203ENST00000553544 MED24O75448 989 aa13.04□□□□□ -0.32
SRP54-203ENST00000553544 ARF4P18085 180 aaPredicted RBP13.04□□□□□ -0.32
SRP54-203ENST00000553544 TGM1P22735 817 aa13.04□□□□□ -0.32
SRP54-203ENST00000553544 RPA1P27694 616 aa13.04□□□□□ -0.32
SRP54-203ENST00000553544 ARL2P36404 184 aa13.04□□□□□ -0.32
SRP54-203ENST00000553544 NRLP54845 237 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms