RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 C7orf31Q8N865 590 aa20.36■□□□□ 0.85
HDAC4-215ENST00000543185 DCLRE1BQ9H816 532 aa20.36■□□□□ 0.85
HDAC4-215ENST00000543185 NCF4Q15080 339 aa20.36■□□□□ 0.85
HDAC4-215ENST00000543185 TRIM13O60858 407 aa20.36■□□□□ 0.85
HDAC4-215ENST00000543185 SEC24DO94855 1032 aaPredicted RBP20.36■□□□□ 0.85
HDAC4-215ENST00000543185 KNOP1Q1ED39 458 aaKnown RBP20.36■□□□□ 0.85
HDAC4-215ENST00000543185 TTC23LQ6PF05 361 aa20.36■□□□□ 0.85
HDAC4-215ENST00000543185 FLAD1Q8NFF5 587 aa20.36■□□□□ 0.85
HDAC4-215ENST00000543185 MLXIPLQ9NP71 852 aa20.36■□□□□ 0.85
HDAC4-215ENST00000543185 CALML6Q8TD86 181 aa20.36■□□□□ 0.85
HDAC4-215ENST00000543185 ERP27Q96DN0 273 aa20.36■□□□□ 0.85
HDAC4-215ENST00000543185 MAGED2Q9UNF1 606 aaPredicted RBP20.36■□□□□ 0.85
HDAC4-215ENST00000543185 CLASP2O75122 1294 aaKnown RBP20.36■□□□□ 0.85
HDAC4-215ENST00000543185 RCSD1Q6JBY9 416 aa20.36■□□□□ 0.85
HDAC4-215ENST00000543185 MAGED4Q96JG8 741 aa20.36■□□□□ 0.85
HDAC4-215ENST00000543185 CPSF1Q10570 1443 aaKnown RBP20.36■□□□□ 0.85
HDAC4-215ENST00000543185 LRRC41Q15345 812 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 INAQ16352 499 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 PRPF39Q86UA1 669 aaKnown RBP20.35■□□□□ 0.85
HDAC4-215ENST00000543185 KIAA0391O15091 583 aaKnown RBP20.35■□□□□ 0.85
HDAC4-215ENST00000543185 GNA15P30679 374 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 CC2D2BQ6DHV5 1058 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 RHPN2Q8IUC4 686 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 CNDP1Q96KN2 507 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 FAM9CQ8IZT9 166 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 ENOPH1Q9UHY7 261 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 PREX2Q70Z35 1606 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 TRIM24O15164 1050 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 BBS2Q9BXC9 721 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 PRRG3Q9BZD7 231 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 CROCCQ5TZA2 2017 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 CLDN3O15551 220 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 SRP72O76094 671 aaKnown RBP20.35■□□□□ 0.85
HDAC4-215ENST00000543185 GUF1Q8N442 669 aaKnown RBP20.35■□□□□ 0.85
HDAC4-215ENST00000543185 FOPNLQ96NB1 174 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 ATAD3AQ9NVI7 634 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 STX7O15400 261 aaKnown RBP20.35■□□□□ 0.85
HDAC4-215ENST00000543185 PSMC3P17980 439 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 CROCCP3Q8IVE0 287 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 KYNUQ16719 465 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 SYDE2Q5VT97 1194 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 DCAF4Q8WV16 495 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 ZFP42Q96MM3 310 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 IMPAD1Q9NX62 359 aa20.35■□□□□ 0.85
HDAC4-215ENST00000543185 FGFR4P22455 802 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 SLC10A5Q5PT55 438 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 MICU2Q8IYU8 434 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 THTPAQ9BU02 230 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 KLHL4Q9C0H6 718 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 H2AFY2Q9P0M6 372 aaPredicted RBP20.34■□□□□ 0.85
HDAC4-215ENST00000543185 FAM160B2Q86V87 743 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 TMA16Q96EY4 203 aaKnown RBP20.34■□□□□ 0.85
HDAC4-215ENST00000543185 RHBDL2Q9NX52 303 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 ANKARQ7Z5J8 1434 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 TAB1Q15750 504 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 PCDHB6Q9Y5E3 794 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 TALDO1P37837 337 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 HSD17B4P51659 736 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 LCORLQ8N3X6 602 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 RBM15Q96T37 977 aaKnown RBP eCLIP20.34■□□□□ 0.85
HDAC4-215ENST00000543185 TIPINQ9BVW5 301 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 ADGRL3Q9HAR2 1447 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 SFNP31947 248 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 PHKA2P46019 1235 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 FAM162AQ96A26 154 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 KRT6BP04259 564 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 KRT6CP48668 564 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 DDX47Q9H0S4 455 aaKnown RBP20.34■□□□□ 0.85
HDAC4-215ENST00000543185 ALDH8A1Q9H2A2 487 aaPredicted RBP20.34■□□□□ 0.85
HDAC4-215ENST00000543185 NOD2Q9HC29 1040 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 SOX13Q9UN79 622 aa20.34■□□□□ 0.85
HDAC4-215ENST00000543185 TMC5Q6UXY8 1006 aa20.33■□□□□ 0.85
HDAC4-215ENST00000543185 BCAMP50895 628 aa20.33■□□□□ 0.85
HDAC4-215ENST00000543185 ATXN3P54252 364 aaPredicted RBP20.33■□□□□ 0.85
HDAC4-215ENST00000543185 ARHGEF6Q15052 776 aa20.33■□□□□ 0.85
HDAC4-215ENST00000543185 LRRC8DQ7L1W4 858 aa20.33■□□□□ 0.85
HDAC4-215ENST00000543185 SP110Q9HB58 689 aa20.33■□□□□ 0.85
HDAC4-215ENST00000543185 ARL8AQ96BM9 186 aa20.33■□□□□ 0.85
HDAC4-215ENST00000543185 BMP3P12645 472 aa20.33■□□□□ 0.85
HDAC4-215ENST00000543185 DDX50Q9BQ39 737 aaKnown RBP20.33■□□□□ 0.85
HDAC4-215ENST00000543185 CARD9Q9H257 536 aa20.33■□□□□ 0.85
HDAC4-215ENST00000543185 KCND2Q9NZV8 630 aa20.33■□□□□ 0.85
HDAC4-215ENST00000543185 FAM170AA1A519 330 aa20.33■□□□□ 0.84
HDAC4-215ENST00000543185 PLA2G4AP47712 749 aa20.33■□□□□ 0.84
HDAC4-215ENST00000543185 NCKAP1LP55160 1127 aa20.33■□□□□ 0.84
HDAC4-215ENST00000543185 ZNF200P98182 395 aaPredicted RBP20.33■□□□□ 0.84
HDAC4-215ENST00000543185 SFR1Q86XK3 245 aa20.33■□□□□ 0.84
HDAC4-215ENST00000543185 ARHGEF26Q96DR7 871 aa20.33■□□□□ 0.84
HDAC4-215ENST00000543185 C8orf37Q96NL8 207 aa20.33■□□□□ 0.84
HDAC4-215ENST00000543185 UBA2Q9UBT2 640 aaPredicted RBP20.33■□□□□ 0.84
HDAC4-215ENST00000543185 RNF103O00237 685 aa20.33■□□□□ 0.84
HDAC4-215ENST00000543185 SCP2P22307 547 aa20.33■□□□□ 0.84
HDAC4-215ENST00000543185 C20orf96Q9NUD7 363 aaPredicted RBP20.33■□□□□ 0.84
HDAC4-215ENST00000543185 SSU72P8A0A1W2PR75 194 aa20.33■□□□□ 0.84
HDAC4-215ENST00000543185 PSMD14O00487 310 aa20.33■□□□□ 0.84
HDAC4-215ENST00000543185 TSPY1Q01534 308 aa20.33■□□□□ 0.84
HDAC4-215ENST00000543185 PIGHQ14442 188 aaPredicted RBP20.33■□□□□ 0.84
HDAC4-215ENST00000543185 AP5M1Q9H0R1 490 aa20.33■□□□□ 0.84
HDAC4-215ENST00000543185 GUCA1CO95843 209 aa20.32■□□□□ 0.84
HDAC4-215ENST00000543185 STX5Q13190 355 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms