RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 NAA15Q9BXJ9 866 aaKnown RBP11.84□□□□□ -0.51
CDH3-203ENST00000542274 FHDC1Q9C0D6 1143 aaPredicted RBP11.84□□□□□ -0.51
CDH3-203ENST00000542274 ABCG4Q9H172 646 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 VPS16Q9H269 839 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 KCTD5Q9NXV2 234 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 ZNF541Q9H0D2 1346 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 USP17L15C9J2P7 530 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 USP17L13C9JLJ4 530 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 USP17L11C9JVI0 530 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 USP17L18D6R9N7 530 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 USP17L22D6RA61 530 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 USP17L17D6RBQ6 530 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 USP17L19D6RCP7 530 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 USP17L20D6RJB6 530 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 CETN3O15182 167 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 ENTPD3O75355 529 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 SERPINB7O75635 380 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 CYP2C9P11712 490 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 ALADP13716 330 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 GNA11P29992 359 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 GMPSP49915 693 aaPredicted RBP11.84□□□□□ -0.51
CDH3-203ENST00000542274 SEC24CP53992 1094 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 USP17L24Q0WX57 530 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 TBX2Q13207 712 aaPredicted RBP11.84□□□□□ -0.51
CDH3-203ENST00000542274 CNPY1Q3B7I2 92 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 DEPDC1Q5TB30 811 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 USP17L6PQ6QN14 398 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 VASH1Q7L8A9 365 aaPredicted RBP11.84□□□□□ -0.51
CDH3-203ENST00000542274 KRT25Q7Z3Z0 450 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 GALNT6Q8NCL4 622 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 AGBL3Q8NEM8 1001 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 NELFBQ8WX92 580 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 GDAP1L1Q96MZ0 367 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 TRPC7Q9HCX4 862 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 MYOZ2Q9NPC6 264 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 FBXL5Q9UKA1 691 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 TLL2Q9Y6L7 1015 aa11.84□□□□□ -0.51
CDH3-203ENST00000542274 ARPC4-TTLL3A0A0A6YYG9 625 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 A0A1B0GTH6 734 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 KLRC4O43908 158 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 GSTA2P09210 222 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 POTEJP0CG39 1038 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 KRT9P35527 623 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 MXI1P50539 228 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 ATP1A2P50993 1020 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 TUBB4BP68371 445 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 KIF22Q14807 665 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 C15orf59Q2T9L4 293 aaPredicted RBP11.83□□□□□ -0.52
CDH3-203ENST00000542274 CDKAL1Q5VV42 579 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 METTL21CQ5VZV1 264 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 SPECC1LQ69YQ0 1117 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 C3orf62Q6ZUJ4 267 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 TOGARAM2Q6ZUX3 1019 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 VPS36Q86VN1 386 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.83□□□□□ -0.52
CDH3-203ENST00000542274 CCDC63Q8NA47 563 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 FLCNQ8NFG4 579 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 CCDC12Q8WUD4 166 aaPredicted RBP11.83□□□□□ -0.52
CDH3-203ENST00000542274 NSMCE3Q96MG7 304 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 MTMR12Q9C0I1 747 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 SPON1Q9HCB6 807 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 KMT5AQ9NQR1 393 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 TAB2Q9NYJ8 693 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 SATB2Q9UPW6 733 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 TDRKHQ9Y2W6 561 aaKnown RBP11.83□□□□□ -0.52
CDH3-203ENST00000542274 NOTOA8MTQ0 251 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 GOLGA8KD6RF30 607 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 RNF225M0QZC1 329 aaPredicted RBP11.83□□□□□ -0.52
CDH3-203ENST00000542274 DDHD2O94830 711 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 FAM107AO95990 144 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 GH2P01242 217 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 COL6A2P12110 1019 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 FCER1AP12319 257 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 DR1Q01658 176 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 RALGDSQ12967 914 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 LAPTM5Q13571 262 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 ASPRV1Q53RT3 343 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 RASIP1Q5U651 963 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 WDR93Q6P2C0 686 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 RUFY4Q6ZNE9 571 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 SNX32Q86XE0 403 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 FRS2Q8WU20 508 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 MIS12Q9H081 205 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.83□□□□□ -0.52
CDH3-203ENST00000542274 PLAAQ9Y263 795 aa11.83□□□□□ -0.52
CDH3-203ENST00000542274 ADCY7P51828 1080 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 TUBA4AP68366 448 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 KRT31Q15323 416 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 ABCB5Q2M3G0 1257 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 ARL13BQ3SXY8 428 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 NEK5Q6P3R8 708 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 KLC3Q6P597 504 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 CCDC84Q86UT8 332 aaPredicted RBP11.82□□□□□ -0.52
CDH3-203ENST00000542274 MICALL2Q8IY33 904 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 APPL2Q8NEU8 664 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 CYFIP2Q96F07 1278 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 EGLN2Q96KS0 407 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 TCF7L2Q9NQB0 619 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 ADD3Q9UEY8 706 aaKnown RBP11.82□□□□□ -0.52
CDH3-203ENST00000542274 PRR12Q9ULL5 1215 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms