RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 DNAJC3Q13217 504 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 MMEL1Q495T6 779 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 FAM91A1Q658Y4 838 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 FAAH2Q6GMR7 532 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 DDHD1Q8NEL9 900 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 UHMK1Q8TAS1 419 aaKnown RBP13.19□□□□□ -0.3
USP3-203ENST00000538686 TNFRSF25Q93038 417 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 SKA1Q96BD8 255 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 NACC2Q96BF6 587 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 PPP1R10Q96QC0 940 aaKnown RBP13.19□□□□□ -0.3
USP3-203ENST00000538686 CCDC77Q9BR77 488 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 OSBPL8Q9BZF1 889 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 CRNKL1Q9BZJ0 848 aaKnown RBP13.19□□□□□ -0.3
USP3-203ENST00000538686 KLHL4Q9C0H6 718 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 CCSER1Q9C0I3 900 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 ATAD3AQ9NVI7 634 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 SELENONQ9NZV5 590 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 PADI4Q9UM07 663 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 SMG5Q9UPR3 1016 aaKnown RBP13.19□□□□□ -0.3
USP3-203ENST00000538686 COQ6Q9Y2Z9 468 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.19□□□□□ -0.3
USP3-203ENST00000538686 NWD1Q149M9 1564 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 SPTLC1O15269 473 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 PRPF4O43172 522 aaKnown RBP eCLIP13.19□□□□□ -0.3
USP3-203ENST00000538686 TFAP2AP05549 437 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 COL6A2P12110 1019 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 CREB1P16220 341 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 PTGIRP43119 386 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 BCAP31P51572 246 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 NSUN2Q08J23 767 aaKnown RBP eCLIP13.19□□□□□ -0.3
USP3-203ENST00000538686 PDAP1Q13442 181 aaKnown RBP13.19□□□□□ -0.3
USP3-203ENST00000538686 KRT81Q14533 505 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 WTAPQ15007 396 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 SEPT7Q16181 437 aaKnown RBP13.19□□□□□ -0.3
USP3-203ENST00000538686 NADK2Q4G0N4 442 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 ZNF394Q53GI3 561 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 MTDHQ86UE4 582 aaKnown RBP13.19□□□□□ -0.3
USP3-203ENST00000538686 VPS36Q86VN1 386 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 ZFP28Q8NHY6 868 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 EME1Q96AY2 570 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 SGF29Q96ES7 293 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 CRAMP1Q96RY5 1269 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 METTL22Q9BUU2 404 aaPredicted RBP13.19□□□□□ -0.3
USP3-203ENST00000538686 UNKQ9C0B0 810 aaKnown RBP13.19□□□□□ -0.3
USP3-203ENST00000538686 C17orf75Q9HAS0 396 aa13.19□□□□□ -0.3
USP3-203ENST00000538686 HEG1Q9ULI3 1381 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 C15orf38-AP3S2A0A0A6YYH1 394 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 SPDYE16A6NNV3 312 aaPredicted RBP13.18□□□□□ -0.3
USP3-203ENST00000538686 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.18□□□□□ -0.3
USP3-203ENST00000538686 ESRRAP11474 423 aaPredicted RBP13.18□□□□□ -0.3
USP3-203ENST00000538686 CCR3P51677 355 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 CALCOCO2Q13137 446 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 RAPGEF1Q13905 1077 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 ALX1Q15699 326 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 PROSER3Q2NL68 480 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 NAALADL2Q58DX5 795 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 RWDD4Q6NW29 188 aaKnown RBP13.18□□□□□ -0.3
USP3-203ENST00000538686 PTF1AQ7RTS3 328 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 ARPINQ7Z6K5 226 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 PALB2Q86YC2 1186 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 PROM2Q8N271 834 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 MARVELD2Q8N4S9 558 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 FANCBQ8NB91 859 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 C7orf25Q9BPX7 421 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 HEPHQ9BQS7 1158 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 TRIM55Q9BYV6 548 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 OSBPL6Q9BZF3 934 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 NDEL1Q9GZM8 345 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 PUS7LQ9H0K6 701 aaKnown RBP13.18□□□□□ -0.3
USP3-203ENST00000538686 CDC42EP4Q9H3Q1 356 aaKnown RBP13.18□□□□□ -0.3
USP3-203ENST00000538686 SENP1Q9P0U3 644 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 ANKFY1Q9P2R3 1169 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 SYNGAP1Q96PV0 1343 aa13.18□□□□□ -0.3
USP3-203ENST00000538686 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.18□□□□□ -0.3
USP3-203ENST00000538686 FER1L4A9Z1Z3 1794 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 A0A1W2PRG0 241 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 RASA4BC9J798 803 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 PIK3CDO00329 1044 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 RASA4O43374 803 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 PEX1O43933 1283 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 ADAM23O75077 832 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 PGM3O95394 542 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 RARBP10826 455 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 CETN2P41208 172 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 NR1H2P55055 460 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 FKBP4Q02790 459 aaKnown RBP eCLIP13.17□□□□□ -0.3
USP3-203ENST00000538686 EARS2Q5JPH6 523 aaKnown RBP13.17□□□□□ -0.3
USP3-203ENST00000538686 SNRNP48Q6IEG0 339 aaKnown RBP13.17□□□□□ -0.3
USP3-203ENST00000538686 NIPAL1Q6NVV3 410 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 DHDDSQ86SQ9 333 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 TMPRSS6Q8IU80 811 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 TTLL11Q8NHH1 800 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 FAM172AQ8WUF8 416 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 NSMCE3Q96MG7 304 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 TSG101Q99816 390 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 TANGO6Q9C0B7 1094 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 CLK4Q9HAZ1 481 aaKnown RBP13.17□□□□□ -0.3
USP3-203ENST00000538686 TAS2R1Q9NYW7 299 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 RABL2BQ9UNT1 228 aa13.17□□□□□ -0.3
USP3-203ENST00000538686 TIMM22Q9Y584 194 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms