RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 H2AFZP0C0S5 128 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 NAMPTP43490 491 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 CETN1Q12798 172 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 DRP2Q13474 957 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 KCTD2Q14681 263 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 HSDL1Q3SXM5 330 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 CELF3Q5SZQ8 465 aaKnown RBP11.58□□□□□ -0.56
CLIP1-210ENST00000538120 KRT39Q6A163 491 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 CCDC62Q6P9F0 684 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 H2AFVQ71UI9 128 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 VPS36Q86VN1 386 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 PALB2Q86YC2 1186 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 LRRC57Q8N9N7 239 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 SPATA4Q8NEY3 305 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 SLC10A4Q96EP9 437 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 MROH8Q9H579 483 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 TMEM8AQ9HCN3 771 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 KIAA1522Q9P206 1035 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-210ENST00000538120 INTUQ9ULD6 942 aa11.58□□□□□ -0.56
CLIP1-210ENST00000538120 LGR5O75473 907 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 PIGRP01833 764 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 RFC5P40937 340 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 GALCP54803 685 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 WNT7BP56706 349 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 ENPEPQ07075 957 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 FAM160B1Q5W0V3 765 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 FBXO16Q8IX29 292 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-210ENST00000538120 HELQQ8TDG4 1101 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 TAS1R2Q8TE23 839 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 SLC20A1Q8WUM9 679 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 SLC7A3Q8WY07 619 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 PPM1EQ8WY54 764 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 ZNF516Q92618 1163 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 ARL8AQ96BM9 186 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 FAM84AQ96KN4 292 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 FAM213AQ9BRX8 229 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.57□□□□□ -0.562e-9■■■■■ 74.8
CLIP1-210ENST00000538120 TAS2R14Q9NYV8 317 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 SH3BP1Q9Y3L3 701 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 A0A0A6YYK5 440 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-210ENST00000538120 ZBTB42B2RXF5 422 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 MAFO75444 373 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-210ENST00000538120 GTF2H1P32780 548 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 GPC3P51654 580 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 CAPSQ13938 189 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 CRELD2Q6UXH1 353 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-210ENST00000538120 SV2AQ7L0J3 742 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 EGFL6Q8IUX8 553 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 SHCBP1Q8NEM2 672 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 TPCN2Q8NHX9 752 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 COPS5Q92905 334 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 BICD1Q96G01 975 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 ZBTB45Q96K62 511 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-210ENST00000538120 AGPAT1Q99943 283 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 TSKSQ9UJT2 592 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 PACSIN2Q9UNF0 486 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-210ENST00000538120 GRIN2DO15399 1336 aa11.57□□□□□ -0.56
CLIP1-210ENST00000538120 IQCA1LA6NCM1 817 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 EXTL3O43909 919 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 ZBTB48P10074 688 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-210ENST00000538120 ABCD1P33897 745 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 LIG4P49917 911 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 CLDN10P78369 228 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 ITIH3Q06033 890 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 FOXD4Q12950 439 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-210ENST00000538120 ICE2Q659A1 982 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 MAP1SQ66K74 1059 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-210ENST00000538120 KCNV1Q6PIU1 500 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 C15orf39Q6ZRI6 1047 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 TRIM50Q86XT4 487 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 FMNL3Q8IVF7 1028 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 MICALL1Q8N3F8 863 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 MMGT1Q8N4V1 131 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 DEPTORQ8TB45 409 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 BCAS4Q8TDM0 211 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 PSPC1Q8WXF1 523 aaKnown RBP11.56□□□□□ -0.56
CLIP1-210ENST00000538120 VTI1AQ96AJ9 217 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 ELMO3Q96BJ8 720 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 MS4A14Q96JA4 679 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 CAPS2Q9BXY5 557 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 GOLPH3Q9H4A6 298 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 PDGFCQ9NRA1 345 aa11.56□□□□□ -0.56
CLIP1-210ENST00000538120 LRRIQ4A6NIV6 560 aa11.55□□□□□ -0.56
CLIP1-210ENST00000538120 ZNF233A6NK53 670 aa11.55□□□□□ -0.56
CLIP1-210ENST00000538120 CCDC172P0C7W6 258 aa11.55□□□□□ -0.56
CLIP1-210ENST00000538120 CHRNB2P17787 502 aa11.55□□□□□ -0.56
CLIP1-210ENST00000538120 TNFAIP3P21580 790 aa11.55□□□□□ -0.56
CLIP1-210ENST00000538120 LIG3P49916 1009 aa11.55□□□□□ -0.56
CLIP1-210ENST00000538120 NLRP11P59045 1033 aaKnown RBP11.55□□□□□ -0.56
CLIP1-210ENST00000538120 GNGT1P63211 74 aa11.55□□□□□ -0.56
CLIP1-210ENST00000538120 PRPF4BQ13523 1007 aaKnown RBP11.55□□□□□ -0.56
CLIP1-210ENST00000538120 TTMPQ5BVD1 217 aa11.55□□□□□ -0.56
CLIP1-210ENST00000538120 SMYD5Q6GMV2 418 aa11.55□□□□□ -0.56
CLIP1-210ENST00000538120 SLFN11Q7Z7L1 901 aa11.55□□□□□ -0.56
CLIP1-210ENST00000538120 TADA2BQ86TJ2 420 aa11.55□□□□□ -0.56
CLIP1-210ENST00000538120 PNMA8AQ86V59 439 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-210ENST00000538120 EFCAB13Q8IY85 973 aa11.55□□□□□ -0.56
CLIP1-210ENST00000538120 FAM71AQ8IYT1 594 aa11.55□□□□□ -0.56
CLIP1-210ENST00000538120 SH2D3CQ8N5H7 860 aa11.55□□□□□ -0.56
CLIP1-210ENST00000538120 KAT2BQ92831 832 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms