RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 PNPLA7Q6ZV29 1317 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 PRRG2O14669 202 aa5.7□□□□□ -1.5
CD44-215ENST00000525241 CYP27B1O15528 508 aa5.7□□□□□ -1.5
CD44-215ENST00000525241 SCGB1D2O95969 90 aa5.7□□□□□ -1.5
CD44-215ENST00000525241 ACRV1P26436 265 aa5.7□□□□□ -1.5
CD44-215ENST00000525241 CYP2C19P33261 490 aa5.7□□□□□ -1.5
CD44-215ENST00000525241 PTH1RQ03431 593 aa5.7□□□□□ -1.5
CD44-215ENST00000525241 RRP1BQ14684 758 aaKnown RBP5.7□□□□□ -1.5
CD44-215ENST00000525241 PPP2R5AQ15172 486 aa5.7□□□□□ -1.5
CD44-215ENST00000525241 NAIF1Q69YI7 327 aaPredicted RBP5.7□□□□□ -1.5
CD44-215ENST00000525241 OTUD7BQ6GQQ9 843 aa5.7□□□□□ -1.5
CD44-215ENST00000525241 PPP4R3AQ6IN85 833 aa5.7□□□□□ -1.5
CD44-215ENST00000525241 IFI44Q8TCB0 444 aa5.7□□□□□ -1.5
CD44-215ENST00000525241 NSUN6Q8TEA1 469 aaKnown RBP5.7□□□□□ -1.5
CD44-215ENST00000525241 TMX3Q96JJ7 454 aa5.7□□□□□ -1.5
CD44-215ENST00000525241 CDK5RAP1Q96SZ6 601 aaKnown RBP5.7□□□□□ -1.5
CD44-215ENST00000525241 MRI1Q9BV20 369 aa5.7□□□□□ -1.5
CD44-215ENST00000525241 GPR87Q9BY21 358 aa5.7□□□□□ -1.5
CD44-215ENST00000525241 SLC12A5Q9H2X9 1139 aa5.7□□□□□ -1.5
CD44-215ENST00000525241 SLC23A1Q9UHI7 598 aa5.7□□□□□ -1.5
CD44-215ENST00000525241 NCANO14594 1321 aa5.7□□□□□ -1.5
CD44-215ENST00000525241 KRTAP4-8A0A0G2JLE6 195 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 PRR5-ARHGAP8B1AHC4 643 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 SNRPA1P09661 255 aaKnown RBP5.69□□□□□ -1.5
CD44-215ENST00000525241 RAP2AP10114 183 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 MAN2A2P49641 1150 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 CLRN1P58418 232 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 KRTAP10-2P60368 255 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 CTXN1P60606 82 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 VPS72Q15906 364 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 SPDYAQ5MJ70 313 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 ATAT1Q5SQI0 421 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 DRICH1Q6PGQ1 229 aaPredicted RBP5.69□□□□□ -1.5
CD44-215ENST00000525241 TTC7BQ86TV6 843 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 CHPFQ8IZ52 775 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 HPS3Q969F9 1004 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 PGBD4Q96DM1 585 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 CLPTM1LQ96KA5 538 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 AIFM3Q96NN9 605 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 MYOCQ99972 504 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 SPON1Q9HCB6 807 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 TCEAL9Q9UHQ7 104 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 CLCA2Q9UQC9 943 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 XDHP47989 1333 aa5.69□□□□□ -1.5
CD44-215ENST00000525241 TEX33O43247 280 aa5.68□□□□□ -1.5
CD44-215ENST00000525241 PRPF3O43395 683 aaKnown RBP5.68□□□□□ -1.5
CD44-215ENST00000525241 TSPAN6O43657 245 aa5.68□□□□□ -1.5
CD44-215ENST00000525241 ATP5JP18859 108 aa5.68□□□□□ -1.5
CD44-215ENST00000525241 LPOP22079 712 aaPredicted RBP5.68□□□□□ -1.5
CD44-215ENST00000525241 RAB39AQ14964 217 aa5.68□□□□□ -1.5
CD44-215ENST00000525241 FAM102BQ5T8I3 360 aa5.68□□□□□ -1.5
CD44-215ENST00000525241 SEM1Q6ZVN7 128 aa5.68□□□□□ -1.5
CD44-215ENST00000525241 EPM2AIP1Q7L775 607 aaPredicted RBP5.68□□□□□ -1.5
CD44-215ENST00000525241 RSPH3Q86UC2 560 aa5.68□□□□□ -1.5
CD44-215ENST00000525241 PLXDC1Q8IUK5 500 aa5.68□□□□□ -1.5
CD44-215ENST00000525241 SYT12Q8IV01 421 aa5.68□□□□□ -1.5
CD44-215ENST00000525241 DRC7Q8IY82 874 aa5.68□□□□□ -1.5
CD44-215ENST00000525241 DCBLD1Q8N8Z6 715 aa5.68□□□□□ -1.5
CD44-215ENST00000525241 RNF169Q8NCN4 708 aa5.68□□□□□ -1.5
CD44-215ENST00000525241 IL17DQ8TAD2 202 aa5.68□□□□□ -1.5
CD44-215ENST00000525241 TFAP2CQ92754 450 aa5.68□□□□□ -1.5
CD44-215ENST00000525241 EXTL1Q92935 676 aa5.68□□□□□ -1.5
CD44-215ENST00000525241 ANLNQ9NQW6 1124 aa5.68□□□□□ -1.5
CD44-215ENST00000525241 RUVBL1Q9Y265 456 aaKnown RBP5.68□□□□□ -1.5
CD44-215ENST00000525241 GRXCR1A8MXD5 290 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 GOLGA6L6A8MZA4 724 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 C1QTNF3-AMACRE9PGA6 284 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 DTNBO60941 627 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 RPLP2P05387 115 aaKnown RBP5.67□□□□□ -1.5
CD44-215ENST00000525241 ADRB1P08588 477 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 BUD31P41223 144 aaPredicted RBP5.67□□□□□ -1.5
CD44-215ENST00000525241 PTTG1IPP53801 180 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 ZNF280AP59817 542 aaPredicted RBP5.67□□□□□ -1.5
CD44-215ENST00000525241 TLE1Q04724 770 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 CRHR2Q13324 411 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 GTF2H3Q13889 308 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 CNGB1Q14028 1251 aaPredicted RBP5.67□□□□□ -1.5
CD44-215ENST00000525241 ZNF267Q14586 743 aaPredicted RBP5.67□□□□□ -1.5
CD44-215ENST00000525241 DACT2Q5SW24 774 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 ATXN7L2Q5T6C5 722 aaPredicted RBP5.67□□□□□ -1.5
CD44-215ENST00000525241 IFIT1BQ5T764 474 aaKnown RBP5.67□□□□□ -1.5
CD44-215ENST00000525241 NXNQ6DKJ4 435 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 EFCAB12Q6NXP0 572 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 B3GNT9Q6UX72 402 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 TMPRSS6Q8IU80 811 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 TCEAL8Q8IYN2 117 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 OR10H5Q8NGA6 315 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 ZFP28Q8NHY6 868 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 TSR2Q969E8 191 aaKnown RBP5.67□□□□□ -1.5
CD44-215ENST00000525241 MVB12AQ96EY5 273 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 FAM30AQ9NZY2 134 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 CALCOCO1Q9P1Z2 691 aa5.67□□□□□ -1.5
CD44-215ENST00000525241 NOB1Q9ULX3 412 aaKnown RBP5.67□□□□□ -1.5
CD44-215ENST00000525241 LRRC14BA6NHZ5 514 aa5.66□□□□□ -1.5
CD44-215ENST00000525241 AP1G1O43747 822 aa5.66□□□□□ -1.5
CD44-215ENST00000525241 OFD1O75665 1012 aa5.66□□□□□ -1.5
CD44-215ENST00000525241 RAP2BP61225 183 aa5.66□□□□□ -1.5
CD44-215ENST00000525241 PGS1Q32NB8 556 aa5.66□□□□□ -1.5
CD44-215ENST00000525241 USP39Q53GS9 565 aaKnown RBP5.66□□□□□ -1.5
CD44-215ENST00000525241 METRNLQ641Q3 311 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms