RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 TMC3Q7Z5M5 1100 aa15.93■□□□□ 0.14
NUP54-217ENST00000514987 DDX42Q86XP3 938 aaKnown RBP eCLIP15.93■□□□□ 0.14
NUP54-217ENST00000514987 ANKRD35Q8N283 1001 aa15.93■□□□□ 0.14
NUP54-217ENST00000514987 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.93■□□□□ 0.14
NUP54-217ENST00000514987 SLC7A3Q8WY07 619 aa15.93■□□□□ 0.14
NUP54-217ENST00000514987 FMO2Q99518 471 aa15.93■□□□□ 0.14
NUP54-217ENST00000514987 TMEM134Q9H6X4 195 aa15.93■□□□□ 0.14
NUP54-217ENST00000514987 PPP1R1BQ9UD71 204 aaPredicted RBP15.93■□□□□ 0.14
NUP54-217ENST00000514987 ZNF541Q9H0D2 1346 aa15.93■□□□□ 0.14
NUP54-217ENST00000514987 IGKV6D-21A0A0A0MT36 114 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 H0YGN5 161 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 K7ERI5 159 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 ZEB2O60315 1214 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 PPFIA2O75334 1257 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 POTEJP0CG39 1038 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 NR1D1P20393 614 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 ARL2P36404 184 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 SLC1A1P43005 524 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 AP3M2P53677 418 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 SOX10P56693 466 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 ZNF211Q13398 564 aaPredicted RBP15.92■□□□□ 0.14
NUP54-217ENST00000514987 CYP1B1Q16678 543 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 NAA35Q5VZE5 725 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.92■□□□□ 0.14
NUP54-217ENST00000514987 CROCCP2Q86T23 111 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 JAMLQ86YT9 394 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 TATDN2Q93075 761 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 CELF4Q9BZC1 486 aaKnown RBP15.92■□□□□ 0.14
NUP54-217ENST00000514987 TOPORSQ9NS56 1045 aaPredicted RBP15.92■□□□□ 0.14
NUP54-217ENST00000514987 GGA3Q9NZ52 723 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 CNOT8Q9UFF9 292 aaKnown RBP15.92■□□□□ 0.14
NUP54-217ENST00000514987 NFS1Q9Y697 457 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 WDR90Q96KV7 1748 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 GRIN3BO60391 1043 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 TGFB3P10600 412 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 TNNI1P19237 187 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 TBXAS1P24557 533 aaPredicted RBP15.92■□□□□ 0.14
NUP54-217ENST00000514987 SP4Q02446 784 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 NEDD9Q14511 834 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 UAP1Q16222 522 aaPredicted RBP15.92■□□□□ 0.14
NUP54-217ENST00000514987 DNAJC21Q5F1R6 531 aaKnown RBP15.92■□□□□ 0.14
NUP54-217ENST00000514987 CYFIP1Q7L576 1253 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 SLC13A5Q86YT5 568 aaPredicted RBP15.92■□□□□ 0.14
NUP54-217ENST00000514987 RIOX2Q8IUF8 465 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 EXOC8Q8IYI6 725 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 GPC2Q8N158 579 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 UBLCP1Q8WVY7 318 aaPredicted RBP15.92■□□□□ 0.14
NUP54-217ENST00000514987 KRT35Q92764 455 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 MAGOHBQ96A72 148 aaKnown RBP15.92■□□□□ 0.14
NUP54-217ENST00000514987 MPHOSPH6Q99547 160 aaKnown RBP15.92■□□□□ 0.14
NUP54-217ENST00000514987 NEUROG2Q9H2A3 272 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 DPH5Q9H2P9 285 aa15.92■□□□□ 0.14
NUP54-217ENST00000514987 DOCK5Q9H7D0 1870 aa15.91■□□□□ 0.14
NUP54-217ENST00000514987 LCTP09848 1927 aa15.91■□□□□ 0.14
NUP54-217ENST00000514987 TULP2O00295 520 aa15.91■□□□□ 0.14
NUP54-217ENST00000514987 HLA-DRAP01903 254 aa15.91■□□□□ 0.14
NUP54-217ENST00000514987 C4BPAP04003 597 aaKnown RBP15.91■□□□□ 0.14
NUP54-217ENST00000514987 PIK3CAP42336 1068 aa15.91■□□□□ 0.14
NUP54-217ENST00000514987 PTGIRP43119 386 aa15.91■□□□□ 0.14
NUP54-217ENST00000514987 FNTAP49354 379 aa15.91■□□□□ 0.14
NUP54-217ENST00000514987 ALDH5A1P51649 535 aaPredicted RBP15.91■□□□□ 0.14
NUP54-217ENST00000514987 DHX9Q08211 1270 aaKnown RBP15.91■□□□□ 0.14
NUP54-217ENST00000514987 LBX2Q6XYB7 198 aa15.91■□□□□ 0.14
NUP54-217ENST00000514987 SRLQ86TD4 932 aa15.91■□□□□ 0.14
NUP54-217ENST00000514987 C12orf50Q8NA57 414 aaPredicted RBP15.91■□□□□ 0.14
NUP54-217ENST00000514987 TRPM4Q8TD43 1214 aa15.91■□□□□ 0.14
NUP54-217ENST00000514987 ATP8B4Q8TF62 1192 aa15.91■□□□□ 0.14
NUP54-217ENST00000514987 FAM167AQ96KS9 214 aa15.91■□□□□ 0.14
NUP54-217ENST00000514987 ZDHHC18Q9NUE0 388 aa15.91■□□□□ 0.14
NUP54-217ENST00000514987 MTRF1LQ9UGC7 380 aaKnown RBP15.91■□□□□ 0.14
NUP54-217ENST00000514987 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.91■□□□□ 0.14
NUP54-217ENST00000514987 NR2E1Q9Y466 385 aa15.91■□□□□ 0.14
NUP54-217ENST00000514987 GAS2O43903 313 aaKnown RBP15.9■□□□□ 0.14
NUP54-217ENST00000514987 UNGP13051 313 aaPredicted RBP15.9■□□□□ 0.14
NUP54-217ENST00000514987 ATP4AP20648 1035 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 GLRA2P23416 452 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 MAPK4P31152 587 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 MAN1A1P33908 653 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 CDR1P51861 262 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 EFNA5P52803 228 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 SP2Q02086 613 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 ZNF844Q08AG5 666 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 GRM1Q13255 1194 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 LIN9Q5TKA1 542 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 PRAMEF18Q5VWM3 479 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 KCTD16Q68DU8 428 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 ZPBP2Q6X784 338 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 SPATS2Q86XZ4 545 aaKnown RBP15.9■□□□□ 0.14
NUP54-217ENST00000514987 PRELID2Q8N945 189 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 ZNF516Q92618 1163 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 VCPIP1Q96JH7 1222 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 TRIM51Q9BSJ1 452 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 TXLNGYQ9BZA5 131 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 ERVK-5Q9HDB9 667 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 RBAKQ9NYW8 714 aaPredicted RBP15.9■□□□□ 0.14
NUP54-217ENST00000514987 RSPH14Q9UHP6 348 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 RRP15Q9Y3B9 282 aaKnown RBP15.9■□□□□ 0.14
NUP54-217ENST00000514987 GRIN2DO15399 1336 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 SSC5DA1L4H1 1573 aa15.9■□□□□ 0.14
NUP54-217ENST00000514987 A0A0G2JMZ2 1700 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms