RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 ZDHHC7Q9NXF8 308 aa13.96□□□□□ -0.17
SKA1-205ENST00000494518 POLIQ9UNA4 740 aa13.96□□□□□ -0.17
SKA1-205ENST00000494518 NUMBLQ9Y6R0 609 aa13.96□□□□□ -0.17
SKA1-205ENST00000494518 FANCMQ8IYD8 2048 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 CCL16O15467 120 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 ZMYND10O75800 440 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 THP07101 528 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 DCNP07585 359 aaKnown RBP13.95□□□□□ -0.18
SKA1-205ENST00000494518 OR52Z1P0C646 297 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 SRFP11831 508 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 XRCC6P12956 609 aaKnown RBP eCLIP13.95□□□□□ -0.18
SKA1-205ENST00000494518 LAMP2P13473 410 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 FSHRP23945 695 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 HTR4Q13639 388 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 SAFBQ15424 915 aaKnown RBP eCLIP13.95□□□□□ -0.18
SKA1-205ENST00000494518 ECM1Q16610 540 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 MAPK6Q16659 721 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 LIN9Q5TKA1 542 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 CYP26C1Q6V0L0 522 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 DEPTORQ8TB45 409 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 LNX1Q8TBB1 728 aaPredicted RBP13.95□□□□□ -0.18
SKA1-205ENST00000494518 HDAC7Q8WUI4 952 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 NKD2Q969F2 451 aaPredicted RBP13.95□□□□□ -0.18
SKA1-205ENST00000494518 CLSTN3Q9BQT9 956 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 POLR3CQ9BUI4 534 aaPredicted RBP13.95□□□□□ -0.18
SKA1-205ENST00000494518 RPP25Q9BUL9 199 aaKnown RBP13.95□□□□□ -0.18
SKA1-205ENST00000494518 RHOBTB2Q9BYZ6 727 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 C2orf40Q9H1Z8 148 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 FBXW11Q9UKB1 542 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 DCHS1Q96JQ0 3298 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 ZMYM2Q9UBW7 1377 aa13.95□□□□□ -0.18
SKA1-205ENST00000494518 FRYLO94915 3013 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 I3L4J1 428 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 SEC24BO95487 1268 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 C8AP07357 584 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 CYP11B2P19099 503 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 CREMQ03060 361 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 PDCD11Q14690 1871 aaKnown RBP13.94□□□□□ -0.18
SKA1-205ENST00000494518 NAB2Q15742 525 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 FAM187BQ17R55 369 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 PPM1LQ5SGD2 360 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 ADSSL1Q8N142 457 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 ERMNQ8TAM6 284 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 PIK3R5Q8WYR1 880 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 C8orf76Q96K31 380 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 SNX27Q96L92 541 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 ADPGKQ9BRR6 497 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 FOXQ1Q9C009 403 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 CCDC113Q9H0I3 377 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 GOLGA2P5Q9HBQ8 144 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 WNT16Q9UBV4 365 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 CEP250Q9BV73 2442 aa13.94□□□□□ -0.18
SKA1-205ENST00000494518 OTOGLQ3ZCN5 2332 aa13.93□□□□□ -0.18
SKA1-205ENST00000494518 DMXL1Q9Y485 3027 aa13.93□□□□□ -0.18
SKA1-205ENST00000494518 ACKR2O00590 384 aa13.93□□□□□ -0.18
SKA1-205ENST00000494518 LRRN2O75325 713 aa13.93□□□□□ -0.18
SKA1-205ENST00000494518 RPA1P27694 616 aa13.93□□□□□ -0.18
SKA1-205ENST00000494518 CCT6AP40227 531 aaKnown RBP13.93□□□□□ -0.18
SKA1-205ENST00000494518 NAMPTP43490 491 aa13.93□□□□□ -0.18
SKA1-205ENST00000494518 TTC38Q5R3I4 469 aa13.93□□□□□ -0.18
SKA1-205ENST00000494518 NT5DC1Q5TFE4 455 aa13.93□□□□□ -0.18
SKA1-205ENST00000494518 PARM1Q6UWI2 310 aa13.93□□□□□ -0.18
SKA1-205ENST00000494518 SLC7A14Q8TBB6 771 aa13.93□□□□□ -0.18
SKA1-205ENST00000494518 FGF14Q92915 247 aa13.93□□□□□ -0.18
SKA1-205ENST00000494518 BHMT2Q9H2M3 363 aa13.93□□□□□ -0.18
SKA1-205ENST00000494518 ARHGEF3Q9NR81 526 aa13.93□□□□□ -0.18
SKA1-205ENST00000494518 HCFC1R1Q9NWW0 138 aa13.93□□□□□ -0.18
SKA1-205ENST00000494518 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.93□□□□□ -0.18
SKA1-205ENST00000494518 R4GN57 208 aa13.93□□□□□ -0.18
SKA1-205ENST00000494518 GPR179Q6PRD1 2367 aa13.92□□□□□ -0.18
SKA1-205ENST00000494518 ANHXE9PGG2 379 aa13.92□□□□□ -0.18
SKA1-205ENST00000494518 OR1D2P34982 312 aa13.92□□□□□ -0.18
SKA1-205ENST00000494518 CLCNKBP51801 687 aa13.92□□□□□ -0.18
SKA1-205ENST00000494518 OSTNP61366 133 aa13.92□□□□□ -0.18
SKA1-205ENST00000494518 GNL2Q13823 731 aaKnown RBP13.92□□□□□ -0.18
SKA1-205ENST00000494518 AXDND1Q5T1B0 1012 aaPredicted RBP13.92□□□□□ -0.18
SKA1-205ENST00000494518 ATF7IP2Q5U623 682 aa13.92□□□□□ -0.18
SKA1-205ENST00000494518 DCLRE1AQ6PJP8 1040 aa13.92□□□□□ -0.18
SKA1-205ENST00000494518 RSPO2Q6UXX9 243 aaPredicted RBP13.92□□□□□ -0.18
SKA1-205ENST00000494518 GPR65Q8IYL9 337 aa13.92□□□□□ -0.18
SKA1-205ENST00000494518 CEP120Q8N960 986 aa13.92□□□□□ -0.18
SKA1-205ENST00000494518 ITFG1Q8TB96 612 aa13.92□□□□□ -0.18
SKA1-205ENST00000494518 KCNG4Q8TDN1 519 aa13.92□□□□□ -0.18
SKA1-205ENST00000494518 ING5Q8WYH8 240 aa13.92□□□□□ -0.18
SKA1-205ENST00000494518 IFT74Q96LB3 600 aa13.92□□□□□ -0.18
SKA1-205ENST00000494518 PATJQ8NI35 1801 aa13.92□□□□□ -0.18
SKA1-205ENST00000494518 B3GAT3O94766 335 aa13.91□□□□□ -0.18
SKA1-205ENST00000494518 PAPLNO95428 1278 aa13.91□□□□□ -0.18
SKA1-205ENST00000494518 TKTP29401 623 aaKnown RBP13.91□□□□□ -0.18
SKA1-205ENST00000494518 BRCC3P46736 316 aa13.91□□□□□ -0.18
SKA1-205ENST00000494518 GPC5P78333 572 aa13.91□□□□□ -0.18
SKA1-205ENST00000494518 PPP2R5AQ15172 486 aa13.91□□□□□ -0.18
SKA1-205ENST00000494518 DCAF4L1Q3SXM0 396 aa13.91□□□□□ -0.18
SKA1-205ENST00000494518 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.91□□□□□ -0.18
SKA1-205ENST00000494518 C3orf58Q8NDZ4 430 aa13.91□□□□□ -0.18
SKA1-205ENST00000494518 FGF13Q92913 245 aa13.91□□□□□ -0.18
SKA1-205ENST00000494518 NXPE3Q969Y0 559 aa13.91□□□□□ -0.18
SKA1-205ENST00000494518 KXD1Q9BQD3 176 aa13.91□□□□□ -0.18
SKA1-205ENST00000494518 DDX19AQ9NUU7 478 aaKnown RBP13.91□□□□□ -0.18
SKA1-205ENST00000494518 CDH7Q9ULB5 785 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms