RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 ANK1P16157 1881 aa27.03■■□□□ 1.92
UPF3A-209ENST00000492270 NMT1P30419 496 aaKnown RBP27.03■■□□□ 1.92
UPF3A-209ENST00000492270 SSTR3P32745 418 aaPredicted RBP27.03■■□□□ 1.92
UPF3A-209ENST00000492270 GLUD2P49448 558 aa27.03■■□□□ 1.92
UPF3A-209ENST00000492270 GJD3Q8N144 294 aa27.03■■□□□ 1.92
UPF3A-209ENST00000492270 TMEM87AQ8NBN3 555 aa27.03■■□□□ 1.92
UPF3A-209ENST00000492270 CASP10Q92851 521 aa27.03■■□□□ 1.92
UPF3A-209ENST00000492270 KLHL5Q96PQ7 755 aa27.03■■□□□ 1.92
UPF3A-209ENST00000492270 S1PR5Q9H228 398 aa27.03■■□□□ 1.92
UPF3A-209ENST00000492270 MRPL17Q9NRX2 175 aaKnown RBP27.03■■□□□ 1.92
UPF3A-209ENST00000492270 CDH22Q9UJ99 828 aa27.03■■□□□ 1.92
UPF3A-209ENST00000492270 TCHHQ07283 1943 aa27.02■■□□□ 1.92
UPF3A-209ENST00000492270 MYMKA6NI61 221 aa27.02■■□□□ 1.92
UPF3A-209ENST00000492270 H0YCG3 227 aa27.02■■□□□ 1.92
UPF3A-209ENST00000492270 PPP6R2O75170 966 aa27.02■■□□□ 1.92
UPF3A-209ENST00000492270 YEATS4O95619 227 aa27.02■■□□□ 1.92
UPF3A-209ENST00000492270 NOLC1Q14978 699 aaKnown RBP eCLIP27.02■■□□□ 1.92
UPF3A-209ENST00000492270 ZPBP2Q6X784 338 aa27.02■■□□□ 1.92
UPF3A-209ENST00000492270 ADHFE1Q8IWW8 467 aa27.02■■□□□ 1.92
UPF3A-209ENST00000492270 PDILTQ8N807 584 aa27.02■■□□□ 1.92
UPF3A-209ENST00000492270 SLC22A17Q8WUG5 538 aa27.02■■□□□ 1.92
UPF3A-209ENST00000492270 BICD1Q96G01 975 aa27.02■■□□□ 1.92
UPF3A-209ENST00000492270 SNX27Q96L92 541 aa27.02■■□□□ 1.92
UPF3A-209ENST00000492270 GOLGA2P5Q9HBQ8 144 aa27.02■■□□□ 1.92
UPF3A-209ENST00000492270 DAXXQ9UER7 740 aaPredicted RBP27.02■■□□□ 1.92
UPF3A-209ENST00000492270 PRKAG3Q9UGI9 489 aa27.02■■□□□ 1.92
UPF3A-209ENST00000492270 TBX20Q9UMR3 447 aa27.02■■□□□ 1.92
UPF3A-209ENST00000492270 PDIA4P13667 645 aaKnown RBP27.01■■□□□ 1.91
UPF3A-209ENST00000492270 IGFBP6P24592 240 aaPredicted RBP27.01■■□□□ 1.91
UPF3A-209ENST00000492270 STAT6P42226 847 aa27.01■■□□□ 1.91
UPF3A-209ENST00000492270 YARSP54577 528 aaKnown RBP27.01■■□□□ 1.91
UPF3A-209ENST00000492270 KIAA0319Q5VV43 1072 aa27.01■■□□□ 1.91
UPF3A-209ENST00000492270 ALKAL1Q6UXT8 129 aa27.01■■□□□ 1.91
UPF3A-209ENST00000492270 CCDC73Q6ZRK6 1079 aa27.01■■□□□ 1.91
UPF3A-209ENST00000492270 DDX12PQ92771 950 aa27.01■■□□□ 1.91
UPF3A-209ENST00000492270 KCNN1Q92952 543 aa27.01■■□□□ 1.91
UPF3A-209ENST00000492270 TOPORSQ9NS56 1045 aaPredicted RBP27.01■■□□□ 1.91
UPF3A-209ENST00000492270 SMIM28A0A1B0GU29 152 aa27■■□□□ 1.91
UPF3A-209ENST00000492270 TADA2AO75478 443 aa27■■□□□ 1.91
UPF3A-209ENST00000492270 MATR3P43243 847 aaKnown RBP eCLIP27■■□□□ 1.91
UPF3A-209ENST00000492270 SOX4Q06945 474 aaPredicted RBP27■■□□□ 1.91
UPF3A-209ENST00000492270 MCL1Q07820 350 aa27■■□□□ 1.91
UPF3A-209ENST00000492270 XKR4Q5GH76 650 aa27■■□□□ 1.91
UPF3A-209ENST00000492270 SV2BQ7L1I2 683 aa27■■□□□ 1.91
UPF3A-209ENST00000492270 SFR1Q86XK3 245 aa27■■□□□ 1.91
UPF3A-209ENST00000492270 SUSD6Q92537 303 aa27■■□□□ 1.91
UPF3A-209ENST00000492270 DNAJC19Q96DA6 116 aa27■■□□□ 1.91
UPF3A-209ENST00000492270 ZMAT2Q96NC0 199 aaKnown RBP27■■□□□ 1.91
UPF3A-209ENST00000492270 ACAP3Q96P50 834 aa27■■□□□ 1.91
UPF3A-209ENST00000492270 EMILIN2Q9BXX0 1053 aa27■■□□□ 1.91
UPF3A-209ENST00000492270 CHST7Q9NS84 486 aa27■■□□□ 1.91
UPF3A-209ENST00000492270 DENND4AQ7Z401 1863 aa27■■□□□ 1.91
UPF3A-209ENST00000492270 C19orf67A6NJJ6 358 aa26.99■■□□□ 1.91
UPF3A-209ENST00000492270 KLRC2P26717 231 aa26.99■■□□□ 1.91
UPF3A-209ENST00000492270 DSG1Q02413 1049 aa26.99■■□□□ 1.91
UPF3A-209ENST00000492270 ZC2HC1CQ53FD0 456 aaPredicted RBP26.99■■□□□ 1.91
UPF3A-209ENST00000492270 KANK3Q6NY19 840 aa26.99■■□□□ 1.91
UPF3A-209ENST00000492270 C12orf76Q8N812 135 aaPredicted RBP26.99■■□□□ 1.91
UPF3A-209ENST00000492270 FEZF2Q8TBJ5 459 aa26.99■■□□□ 1.91
UPF3A-209ENST00000492270 SF3B1O75533 1304 aaKnown RBP eCLIP26.98■■□□□ 1.91
UPF3A-209ENST00000492270 HNRNPDLO14979 420 aaKnown RBP26.98■■□□□ 1.91
UPF3A-209ENST00000492270 TEX28O15482 410 aa26.98■■□□□ 1.91
UPF3A-209ENST00000492270 CLDN3O15551 220 aa26.98■■□□□ 1.91
UPF3A-209ENST00000492270 CUTAO60888 179 aa26.98■■□□□ 1.91
UPF3A-209ENST00000492270 HOXB8P17481 243 aaPredicted RBP26.98■■□□□ 1.91
UPF3A-209ENST00000492270 LIG4P49917 911 aa26.98■■□□□ 1.91
UPF3A-209ENST00000492270 CLCN4P51793 760 aa26.98■■□□□ 1.91
UPF3A-209ENST00000492270 CLCNKBP51801 687 aa26.98■■□□□ 1.91
UPF3A-209ENST00000492270 GTF2BQ00403 316 aa26.98■■□□□ 1.91
UPF3A-209ENST00000492270 USP41Q3LFD5 358 aa26.98■■□□□ 1.91
UPF3A-209ENST00000492270 KIAA1841Q6NSI8 718 aa26.98■■□□□ 1.91
UPF3A-209ENST00000492270 SLC39A4Q6P5W5 647 aa26.98■■□□□ 1.91
UPF3A-209ENST00000492270 SHC4Q6S5L8 630 aa26.98■■□□□ 1.91
UPF3A-209ENST00000492270 PIGRP01833 764 aa26.97■■□□□ 1.91
UPF3A-209ENST00000492270 TNFSF9P41273 254 aa26.97■■□□□ 1.91
UPF3A-209ENST00000492270 DNM1Q05193 864 aaKnown RBP26.97■■□□□ 1.91
UPF3A-209ENST00000492270 RTP2Q5QGT7 225 aa26.97■■□□□ 1.91
UPF3A-209ENST00000492270 AXDND1Q5T1B0 1012 aaPredicted RBP26.97■■□□□ 1.91
UPF3A-209ENST00000492270 STAMQ92783 540 aa26.97■■□□□ 1.91
UPF3A-209ENST00000492270 EPHX3Q9H6B9 360 aa26.97■■□□□ 1.91
UPF3A-209ENST00000492270 CNTN3Q9P232 1028 aa26.97■■□□□ 1.91
UPF3A-209ENST00000492270 SSX2IPQ9Y2D8 614 aa26.97■■□□□ 1.91
UPF3A-209ENST00000492270 ZDHHC9Q9Y397 364 aa26.97■■□□□ 1.91
UPF3A-209ENST00000492270 WEE2P0C1S8 567 aa26.96■■□□□ 1.91
UPF3A-209ENST00000492270 CBX2Q14781 532 aaPredicted RBP26.96■■□□□ 1.91
UPF3A-209ENST00000492270 E2F4Q16254 413 aa26.96■■□□□ 1.91
UPF3A-209ENST00000492270 SLC10A6Q3KNW5 377 aa26.96■■□□□ 1.91
UPF3A-209ENST00000492270 TPRNQ4KMQ1 711 aa26.96■■□□□ 1.91
UPF3A-209ENST00000492270 ZBTB41Q5SVQ8 909 aa26.96■■□□□ 1.91
UPF3A-209ENST00000492270 RARS2Q5T160 578 aaKnown RBP26.96■■□□□ 1.91
UPF3A-209ENST00000492270 PRSS55Q6UWB4 352 aaPredicted RBP26.96■■□□□ 1.91
UPF3A-209ENST00000492270 PPFIBP1Q86W92 1011 aa26.96■■□□□ 1.91
UPF3A-209ENST00000492270 MAP4K3Q8IVH8 894 aa26.96■■□□□ 1.91
UPF3A-209ENST00000492270 C3orf58Q8NDZ4 430 aa26.96■■□□□ 1.91
UPF3A-209ENST00000492270 RIN2Q8WYP3 895 aaPredicted RBP26.96■■□□□ 1.91
UPF3A-209ENST00000492270 CHAMP1Q96JM3 812 aa26.96■■□□□ 1.91
UPF3A-209ENST00000492270 IKZF4Q9H2S9 585 aa26.96■■□□□ 1.91
UPF3A-209ENST00000492270 RXFP1Q9HBX9 757 aa26.96■■□□□ 1.91
UPF3A-209ENST00000492270 DZANK1Q9NVP4 752 aa26.96■■□□□ 1.91
UPF3A-209ENST00000492270 TISP43B9A030 160 aa26.95■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms