RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 MTM1Q13496 603 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 SMIM5Q71RC9 77 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 ENOSF1Q7L5Y1 443 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 AURKCQ9UQB9 309 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 MAP3K4Q9Y6R4 1608 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 CCDC78A2IDD5 438 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 SYNDIG1LA6NDD5 238 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 SLC10A5Q5PT55 438 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 SEC16BQ96JE7 1060 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 ZIM3Q96PE6 472 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 C7orf25Q9BPX7 421 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 CCSER1Q9C0I3 900 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 MRPL40Q9NQ50 206 aaKnown RBP18.6■□□□□ 0.57
NPHP4-209ENST00000489180 STX18Q9P2W9 335 aaKnown RBP18.6■□□□□ 0.57
NPHP4-209ENST00000489180 E2F8A0AVK6 867 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 SLC16A3O15427 465 aaKnown RBP18.6■□□□□ 0.57
NPHP4-209ENST00000489180 RHOBTB3O94955 611 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 CARSP49589 748 aaKnown RBP18.6■□□□□ 0.57
NPHP4-209ENST00000489180 PDIA5Q14554 519 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 EPHA7Q15375 998 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 RABGAP1LQ5R372 815 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 NSUN4Q96CB9 384 aaKnown RBP18.6■□□□□ 0.57
NPHP4-209ENST00000489180 EGFL8Q99944 293 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 STK33Q9BYT3 514 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 WWP1Q9H0M0 922 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 SLC9A1P19634 815 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 ANTXR2P58335 489 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 PRAMEP78395 509 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 KIF2BQ8N4N8 673 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 RUBCNQ92622 972 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 PGBD4Q96DM1 585 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 UNC45AQ9H3U1 944 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 TUBE1Q9UJT0 475 aa18.6■□□□□ 0.57
NPHP4-209ENST00000489180 ACOT2P49753 483 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 SEC24CP53992 1094 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 LRIG3Q6UXM1 1119 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 CLMNQ96JQ2 1002 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 SPATA33Q96N06 139 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 ATXN3P54252 364 aaPredicted RBP18.59■□□□□ 0.57
NPHP4-209ENST00000489180 TSPY1Q01534 308 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 KIF12Q96FN5 646 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 SP110Q9HB58 689 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 CHORDC1Q9UHD1 332 aaPredicted RBP18.59■□□□□ 0.57
NPHP4-209ENST00000489180 CYFIP2Q96F07 1278 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 XPO6Q96QU8 1125 aaKnown RBP18.59■□□□□ 0.57
NPHP4-209ENST00000489180 C2orf40Q9H1Z8 148 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 PITPNM2Q9BZ72 1349 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 RASSF10A6NK89 507 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 FMO5P49326 533 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 LDHDQ86WU2 507 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 AGAP3Q96P47 875 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 TSSK1BQ9BXA7 367 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 EHD2Q9NZN4 543 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 ZFATQ9P243 1243 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 MOSPD1Q9UJG1 213 aa18.59■□□□□ 0.57
NPHP4-209ENST00000489180 FDPSP14324 419 aaKnown RBP18.58■□□□□ 0.57
NPHP4-209ENST00000489180 ITPRIPL1Q6GPH6 555 aa18.58■□□□□ 0.57
NPHP4-209ENST00000489180 SEPT12Q8IYM1 358 aa18.58■□□□□ 0.57
NPHP4-209ENST00000489180 GANCQ8TET4 914 aa18.58■□□□□ 0.57
NPHP4-209ENST00000489180 ARHGEF1Q92888 912 aaKnown RBP18.58■□□□□ 0.57
NPHP4-209ENST00000489180 DACH2Q96NX9 599 aa18.58■□□□□ 0.57
NPHP4-209ENST00000489180 SLC8A2Q9UPR5 921 aa18.58■□□□□ 0.57
NPHP4-209ENST00000489180 USP15Q9Y4E8 981 aaPredicted RBP18.58■□□□□ 0.57
NPHP4-209ENST00000489180 ADGRL3Q9HAR2 1447 aa18.58■□□□□ 0.57
NPHP4-209ENST00000489180 COPB2P35606 906 aa18.58■□□□□ 0.57
NPHP4-209ENST00000489180 SLC1A1P43005 524 aa18.58■□□□□ 0.57
NPHP4-209ENST00000489180 KCNJ6P48051 423 aa18.58■□□□□ 0.57
NPHP4-209ENST00000489180 GRIN1Q05586 938 aa18.58■□□□□ 0.57
NPHP4-209ENST00000489180 CACNB2Q08289 660 aaPredicted RBP18.58■□□□□ 0.57
NPHP4-209ENST00000489180 DUOXA2Q1HG44 320 aa18.58■□□□□ 0.57
NPHP4-209ENST00000489180 ZC2HC1CQ53FD0 456 aaPredicted RBP18.58■□□□□ 0.57
NPHP4-209ENST00000489180 RARS2Q5T160 578 aaKnown RBP18.58■□□□□ 0.57
NPHP4-209ENST00000489180 RANBP1P43487 201 aa18.58■□□□□ 0.56
NPHP4-209ENST00000489180 TAS2R42Q7RTR8 314 aa18.58■□□□□ 0.56
NPHP4-209ENST00000489180 ACAP3Q96P50 834 aa18.58■□□□□ 0.56
NPHP4-209ENST00000489180 KLF6Q99612 283 aaPredicted RBP18.58■□□□□ 0.56
NPHP4-209ENST00000489180 MAGEB5Q9BZ81 275 aa18.58■□□□□ 0.56
NPHP4-209ENST00000489180 TUFT1Q9NNX1 390 aa18.58■□□□□ 0.56
NPHP4-209ENST00000489180 USP42Q9H9J4 1324 aaKnown RBP18.58■□□□□ 0.56
NPHP4-209ENST00000489180 CTDNEP1O95476 244 aa18.58■□□□□ 0.56
NPHP4-209ENST00000489180 LSP1P33241 339 aa18.58■□□□□ 0.56
NPHP4-209ENST00000489180 FLOT2Q14254 428 aa18.58■□□□□ 0.56
NPHP4-209ENST00000489180 TMEM247A6NEH6 219 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 RGS7P49802 495 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 MCEEQ96PE7 176 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 NEU2Q9Y3R4 380 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 PREX2Q70Z35 1606 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 DYNC1I2Q13409 638 aaKnown RBP18.57■□□□□ 0.56
NPHP4-209ENST00000489180 RCOR2Q8IZ40 523 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 OLFM3Q96PB7 478 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 XPO7Q9UIA9 1087 aaKnown RBP18.57■□□□□ 0.56
NPHP4-209ENST00000489180 SUFUQ9UMX1 484 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 PCDHA10Q9Y5I2 948 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 CLTCL1P53675 1640 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 APRTP07741 180 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 WDR72Q3MJ13 1102 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 GCNAQ96QF7 691 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 FBXO40Q9UH90 709 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 SSU72P8A0A1W2PR75 194 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 SEMA3FQ13275 785 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms