RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	ERMN	Q8TAM6	284 aa		9.7	□□□□□ -0.86
USP4-213	ENST00000488520	CRYGN	Q8WXF5	182 aa		9.7	□□□□□ -0.86
USP4-213	ENST00000488520	NKD2	Q969F2	451 aa	Predicted RBP	9.7	□□□□□ -0.86
USP4-213	ENST00000488520	SCLT1	Q96NL6	688 aa		9.7	□□□□□ -0.86
USP4-213	ENST00000488520	NECTIN4	Q96NY8	510 aa		9.7	□□□□□ -0.86
USP4-213	ENST00000488520	TTC12	Q9H892	705 aa	Predicted RBP	9.7	□□□□□ -0.86
USP4-213	ENST00000488520	ZNF395	Q9H8N7	513 aa	Predicted RBP	9.7	□□□□□ -0.86
USP4-213	ENST00000488520	GABBR1	Q9UBS5	961 aa		9.7	□□□□□ -0.86
USP4-213	ENST00000488520	PCDHB6	Q9Y5E3	794 aa		9.7	□□□□□ -0.86
USP4-213	ENST00000488520	PATJ	Q8NI35	1801 aa		9.7	□□□□□ -0.86
USP4-213	ENST00000488520	IGLV3-22	A0A075B6J6	115 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	9.69	□□□□□ -0.86
USP4-213	ENST00000488520	GOLGA6L4	A6NEF3	574 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520		H3BM21	787 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	CHMP2A	O43633	222 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	PI15	O43692	258 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	ZC3H11A	O75152	810 aa	Known RBP eCLIP	9.69	□□□□□ -0.86
USP4-213	ENST00000488520	EIF4B	P23588	611 aa	Known RBP	9.69	□□□□□ -0.86
USP4-213	ENST00000488520	SFN	P31947	248 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	ALDH7A1	P49419	539 aa	Known RBP	9.69	□□□□□ -0.86
USP4-213	ENST00000488520	TOB1	P50616	345 aa	Predicted RBP	9.69	□□□□□ -0.86
USP4-213	ENST00000488520	JAK3	P52333	1124 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	FOXK2	Q01167	660 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	VAC14	Q08AM6	782 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	PDIA5	Q14554	519 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	ATAT1	Q5SQI0	421 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	ARL6IP4	Q66PJ3	421 aa	Known RBP	9.69	□□□□□ -0.86
USP4-213	ENST00000488520	ZNF746	Q6NUN9	644 aa	Predicted RBP	9.69	□□□□□ -0.86
USP4-213	ENST00000488520	FAM173B	Q6P4H8	233 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	TMC5	Q6UXY8	1006 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	SMAP1	Q8IYB5	467 aa	Predicted RBP	9.69	□□□□□ -0.86
USP4-213	ENST00000488520	ADSSL1	Q8N142	457 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	KDF1	Q8NAX2	398 aa	Predicted RBP	9.69	□□□□□ -0.86
USP4-213	ENST00000488520	SLC5A5	Q92911	643 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	TMEM169	Q96HH4	297 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	MBOAT7	Q96N66	472 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	MAP7D2	Q96T17	732 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	INSM2	Q96T92	566 aa	Predicted RBP	9.69	□□□□□ -0.86
USP4-213	ENST00000488520	ADAMTS10	Q9H324	1103 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	NRBP2	Q9NSY0	501 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	PCDHB11	Q9Y5F2	797 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	PCDHA10	Q9Y5I2	948 aa		9.69	□□□□□ -0.86
USP4-213	ENST00000488520	MAFB	Q9Y5Q3	323 aa	Predicted RBP	9.69	□□□□□ -0.86
USP4-213	ENST00000488520	FIGNL2	A6NMB9	653 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	WDR64	B1ANS9	1081 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	MAGEB2	O15479	319 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	SLC37A4	O43826	429 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	EOMES	O95936	686 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	TMOD1	P28289	359 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	PRPH	P41219	470 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	CTSO	P43234	321 aa	Predicted RBP	9.68	□□□□□ -0.86
USP4-213	ENST00000488520	ID4	P47928	161 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	GPC3	P51654	580 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	CLCN5	P51795	746 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	BMS1	Q14692	1282 aa	Known RBP	9.68	□□□□□ -0.86
USP4-213	ENST00000488520	CWF19L1	Q69YN2	538 aa	Known RBP	9.68	□□□□□ -0.86
USP4-213	ENST00000488520	NCAPH2	Q6IBW4	605 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	KIAA1841	Q6NSI8	718 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	FAM43B	Q6ZT52	329 aa	Predicted RBP	9.68	□□□□□ -0.86
USP4-213	ENST00000488520	TMEM173	Q86WV6	379 aa	Predicted RBP	9.68	□□□□□ -0.86
USP4-213	ENST00000488520	ZDHHC14	Q8IZN3	488 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	RDM1	Q8NG50	284 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	RASSF8	Q8NHQ8	419 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	LPP	Q93052	612 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	SPATA32	Q96LK8	384 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	SCAND2P	Q9GZW5	306 aa	Predicted RBP	9.68	□□□□□ -0.86
USP4-213	ENST00000488520	GBP3	Q9H0R5	595 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	ZBP1	Q9H171	429 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	POLM	Q9NP87	494 aa	Predicted RBP	9.68	□□□□□ -0.86
USP4-213	ENST00000488520	KCNMB3	Q9NPA1	279 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	DISC1	Q9NRI5	854 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	LRWD1	Q9UFC0	647 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520	CLIC4	Q9Y696	253 aa		9.68	□□□□□ -0.86
USP4-213	ENST00000488520		A0A0U1RQF3	1178 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	VWA3A	A6NCI4	1184 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	SPTLC2	O15270	562 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	PSMD10	O75832	226 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	SSB	P05455	408 aa	Known RBP eCLIP	9.67	□□□□□ -0.86
USP4-213	ENST00000488520	MARCKS	P29966	332 aa	Predicted RBP	9.67	□□□□□ -0.86
USP4-213	ENST00000488520	TXLNA	P40222	546 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	UBA7	P41226	1012 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	ME1	P48163	572 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	DNM1	Q05193	864 aa	Known RBP	9.67	□□□□□ -0.86
USP4-213	ENST00000488520	PKP1	Q13835	747 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	SLC39A14	Q15043	492 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	EPHA7	Q15375	998 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	KRT79	Q5XKE5	535 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	OTUD6A	Q7L8S5	288 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	CABP7	Q86V35	215 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	LINC01465	Q8N7H1	131 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	ETNPPL	Q8TBG4	499 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	KCNG4	Q8TDN1	519 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	SLC22A17	Q8WUG5	538 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	BCL7C	Q8WUZ0	217 aa	Predicted RBP	9.67	□□□□□ -0.86
USP4-213	ENST00000488520	LENG9	Q96B70	501 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	ACSF2	Q96CM8	615 aa	Predicted RBP	9.67	□□□□□ -0.86
USP4-213	ENST00000488520	CDK5RAP3	Q96JB5	506 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	CCDC43	Q96MW1	224 aa	Known RBP	9.67	□□□□□ -0.86
USP4-213	ENST00000488520	MTMR9	Q96QG7	549 aa		9.67	□□□□□ -0.86
USP4-213	ENST00000488520	MRPL9	Q9BYD2	267 aa	Known RBP	9.67	□□□□□ -0.86

Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms