RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 CCT6BQ92526 530 aa11.71□□□□□ -0.53
HDAC6-228ENST00000486227 CHMP6Q96FZ7 201 aa11.71□□□□□ -0.53
HDAC6-228ENST00000486227 FAM86B1E9PN63 330 aa11.71□□□□□ -0.53
HDAC6-228ENST00000486227 RASGRF2O14827 1237 aa11.71□□□□□ -0.53
HDAC6-228ENST00000486227 SART1O43290 800 aaKnown RBP11.71□□□□□ -0.53
HDAC6-228ENST00000486227 INHBAP08476 426 aa11.71□□□□□ -0.53
HDAC6-228ENST00000486227 FAM86B2P0C5J1 330 aa11.71□□□□□ -0.53
HDAC6-228ENST00000486227 PSMC1P62191 440 aaKnown RBP11.71□□□□□ -0.53
HDAC6-228ENST00000486227 Q4G0T1 1027 aa11.71□□□□□ -0.53
HDAC6-228ENST00000486227 ARHGEF18Q6ZSZ5 1173 aa11.71□□□□□ -0.53
HDAC6-228ENST00000486227 MIPOL1Q8TD10 442 aa11.71□□□□□ -0.53
HDAC6-228ENST00000486227 SCFD1Q8WVM8 642 aa11.71□□□□□ -0.53
HDAC6-228ENST00000486227 SPDL1Q96EA4 605 aa11.71□□□□□ -0.53
HDAC6-228ENST00000486227 FOXP2O15409 715 aa11.71□□□□□ -0.54
HDAC6-228ENST00000486227 HUS1O60921 280 aa11.71□□□□□ -0.54
HDAC6-228ENST00000486227 SCP2P22307 547 aa11.71□□□□□ -0.54
HDAC6-228ENST00000486227 GCLCP48506 637 aaPredicted RBP11.71□□□□□ -0.54
HDAC6-228ENST00000486227 SESN3P58005 492 aa11.71□□□□□ -0.54
HDAC6-228ENST00000486227 CDC42EP1Q00587 391 aa11.71□□□□□ -0.54
HDAC6-228ENST00000486227 PLCB4Q15147 1175 aa11.71□□□□□ -0.54
HDAC6-228ENST00000486227 CAPRIN2Q6IMN6 1127 aaKnown RBP11.71□□□□□ -0.54
HDAC6-228ENST00000486227 RRAGCQ9HB90 399 aa11.71□□□□□ -0.54
HDAC6-228ENST00000486227 SCOCQ9UIL1 159 aa11.71□□□□□ -0.54
HDAC6-228ENST00000486227 CPSF3Q9UKF6 684 aaKnown RBP11.71□□□□□ -0.54
HDAC6-228ENST00000486227 M0QYV0 167 aa11.71□□□□□ -0.54
HDAC6-228ENST00000486227 KIF3CO14782 793 aa11.71□□□□□ -0.54
HDAC6-228ENST00000486227 TJP3O95049 919 aa11.71□□□□□ -0.54
HDAC6-228ENST00000486227 MXD4Q14582 209 aaPredicted RBP11.71□□□□□ -0.54
HDAC6-228ENST00000486227 KIAA0895Q8NCT3 520 aa11.71□□□□□ -0.54
HDAC6-228ENST00000486227 KIF12Q96FN5 646 aa11.71□□□□□ -0.54
HDAC6-228ENST00000486227 PDCD2LQ9BRP1 358 aa11.71□□□□□ -0.54
HDAC6-228ENST00000486227 VCX3AQ9NNX9 186 aa11.71□□□□□ -0.54
HDAC6-228ENST00000486227 SMARCAL1Q9NZC9 954 aa11.71□□□□□ -0.54
HDAC6-228ENST00000486227 RTN2O75298 545 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 FAM107AO95990 144 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 KLRC1P26715 233 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 NAB2Q15742 525 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 NT5DC1Q5TFE4 455 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 TRAPPC11Q7Z392 1133 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 GPC2Q8N158 579 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 SLC35G2Q8TBE7 412 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 RBM41Q96IZ5 413 aaKnown RBP11.7□□□□□ -0.54
HDAC6-228ENST00000486227 SPDYE16A6NNV3 312 aaPredicted RBP11.7□□□□□ -0.54
HDAC6-228ENST00000486227 KIAA0391O15091 583 aaKnown RBP11.7□□□□□ -0.54
HDAC6-228ENST00000486227 CRCPO75575 148 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 SKIP12755 728 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 SAT1P21673 171 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 NCOA4Q13772 614 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 MSL3Q8N5Y2 521 aaKnown RBP11.7□□□□□ -0.54
HDAC6-228ENST00000486227 RNPC3Q96LT9 517 aaKnown RBP11.7□□□□□ -0.54
HDAC6-228ENST00000486227 SH3GL3Q99963 347 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 GOLPH3Q9H4A6 298 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 AMACRQ9UHK6 382 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 RPS6KA5O75582 802 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 TMED2Q15363 201 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 GNASQ5JWF2 1037 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 LRRC8CQ8TDW0 803 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 RILPQ96NA2 401 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 PI4K2AQ9BTU6 479 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 STRIP2Q9ULQ0 834 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 IGSF9BQ9UPX0 1349 aa11.7□□□□□ -0.54
HDAC6-228ENST00000486227 ZBED1O96006 694 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 TSPY1Q01534 308 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 LRIG3Q6UXM1 1119 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 TRIM72Q6ZMU5 477 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 SLC40A1Q9NP59 571 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 XRN1Q8IZH2 1706 aaKnown RBP11.69□□□□□ -0.54
HDAC6-228ENST00000486227 ATRNO75882 1429 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 AP3M2P53677 418 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 FKBP1AP62942 108 aaKnown RBP11.69□□□□□ -0.54
HDAC6-228ENST00000486227 MAP7D1Q3KQU3 841 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 KCNK18Q7Z418 384 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 CDR2LQ86X02 465 aaPredicted RBP11.69□□□□□ -0.54
HDAC6-228ENST00000486227 RDM1Q8NG50 284 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 CPA5Q8WXQ8 436 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 GLT1D1Q96MS3 346 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 KIAA1683Q9H0B3 1180 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 BLOC1S4Q9NUP1 217 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 TBX20Q9UMR3 447 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 MAGED2Q9UNF1 606 aaPredicted RBP11.69□□□□□ -0.54
HDAC6-228ENST00000486227 KIF13AQ9H1H9 1805 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 A0A087X0T9 212 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 ALDH1A1P00352 501 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 HLA-DRAP01903 254 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 FAM228BP0C875 321 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 RGS2P41220 211 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 PTGISQ16647 500 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 CBWD1Q9BRT8 395 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 WNT8AQ9H1J5 351 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 DONSONQ9NYP3 566 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 TTC7AQ9ULT0 858 aaPredicted RBP11.69□□□□□ -0.54
HDAC6-228ENST00000486227 EXOC1LA0A1B0GW35 172 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 SH3BP5O60239 455 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 RFC5P40937 340 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 EPC2Q52LR7 807 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 NUGGCQ68CJ6 796 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 PDIK1LQ8N165 341 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 ELMOD1Q8N336 334 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 SGSM3Q96HU1 749 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 ZIM3Q96PE6 472 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms