RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 SYNJ2BP-COX16A0A087WUM0 186 aa15.56■□□□□ 0.08
HDAC6-220ENST00000477528 RASA4BC9J798 803 aa15.56■□□□□ 0.08
HDAC6-220ENST00000477528 ATMINO43313 823 aaPredicted RBP15.56■□□□□ 0.08
HDAC6-220ENST00000477528 RASA4O43374 803 aa15.56■□□□□ 0.08
HDAC6-220ENST00000477528 ZBED1O96006 694 aa15.56■□□□□ 0.08
HDAC6-220ENST00000477528 NPTX2P47972 431 aa15.56■□□□□ 0.08
HDAC6-220ENST00000477528 ACTR2P61160 394 aa15.56■□□□□ 0.08
HDAC6-220ENST00000477528 MUM1L1Q5H9M0 696 aa15.56■□□□□ 0.08
HDAC6-220ENST00000477528 SRLQ86TD4 932 aa15.56■□□□□ 0.08
HDAC6-220ENST00000477528 CREG2Q8IUH2 290 aa15.56■□□□□ 0.08
HDAC6-220ENST00000477528 CHMP6Q96FZ7 201 aa15.56■□□□□ 0.08
HDAC6-220ENST00000477528 RPS6KC1Q96S38 1066 aa15.56■□□□□ 0.08
HDAC6-220ENST00000477528 ZSWIM1Q9BR11 485 aa15.56■□□□□ 0.08
HDAC6-220ENST00000477528 SLC38A10Q9HBR0 1119 aa15.56■□□□□ 0.08
HDAC6-220ENST00000477528 CYP26B1Q9NR63 512 aa15.56■□□□□ 0.08
HDAC6-220ENST00000477528 COX16Q9P0S2 106 aa15.56■□□□□ 0.08
HDAC6-220ENST00000477528 AGTP01019 485 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 GZMAP12544 262 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 ITIH2P19823 946 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 FGFR4P22455 802 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 GTF2H1P32780 548 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 RNASELQ05823 741 aaKnown RBP15.55■□□□□ 0.08
HDAC6-220ENST00000477528 HYIQ5T013 277 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 SLC30A10Q6XR72 485 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 TRMT10CQ7L0Y3 403 aaKnown RBP15.55■□□□□ 0.08
HDAC6-220ENST00000477528 CATSPER4Q7RTX7 472 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 PDCD2LQ9BRP1 358 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 CXCL9Q07325 125 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 CDO1Q16878 200 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 NBPF9Q3BBW0 867 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 FAM133BQ5BKY9 247 aaKnown RBP15.55■□□□□ 0.08
HDAC6-220ENST00000477528 TRIM42Q8IWZ5 723 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 PPP4R1Q8TF05 950 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 KLHL29Q96CT2 875 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 AP5M1Q9H0R1 490 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 RANBP17Q9H2T7 1088 aaKnown RBP15.55■□□□□ 0.08
HDAC6-220ENST00000477528 TTLL3Q9Y4R7 772 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 ALS2Q96Q42 1657 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 RNF225M0QZC1 329 aaPredicted RBP15.55■□□□□ 0.08
HDAC6-220ENST00000477528 PCK1P35558 622 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 BACE1P56817 501 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 CDR2Q01850 454 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 TSNAXIP1Q2TAA8 658 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 OR2W6PQ8NHA6 318 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 CAVIN3Q969G5 261 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 TRAIPQ9BWF2 469 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 TTC7AQ9ULT0 858 aaPredicted RBP15.55■□□□□ 0.08
HDAC6-220ENST00000477528 LAMB4A4D0S4 1761 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 EPHB6O15197 1021 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 VCAM1P19320 739 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 GPS1Q13098 491 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 ACAD10Q6JQN1 1059 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 SRRM1Q8IYB3 904 aaKnown RBP15.55■□□□□ 0.08
HDAC6-220ENST00000477528 RCOR2Q8IZ40 523 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 GBP7Q8N8V2 638 aaPredicted RBP15.55■□□□□ 0.08
HDAC6-220ENST00000477528 RNF169Q8NCN4 708 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 SENP7Q9BQF6 1050 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 KIAA1683Q9H0B3 1180 aa15.55■□□□□ 0.08
HDAC6-220ENST00000477528 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.55■□□□□ 0.08
HDAC6-220ENST00000477528 CES2O00748 559 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 SGPL1O95470 568 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 OATP04181 439 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 RARRES1P49788 294 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 SPARCL1Q14515 664 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 SGSM1Q2NKQ1 1148 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 MMS22LQ6ZRQ5 1243 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 TMC2Q8TDI7 906 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 PI4K2AQ9BTU6 479 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 TMEM117Q9H0C3 514 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 PXMP2Q9NR77 195 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 GGA3Q9NZ52 723 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 M0QYV0 167 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 BRAFP15056 766 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 GARTP22102 1010 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 SSTR3P32745 418 aaPredicted RBP15.54■□□□□ 0.08
HDAC6-220ENST00000477528 HSD17B3P37058 310 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 KCNMA1Q12791 1236 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 OR6B3Q8NGW1 331 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 BAP1Q92560 729 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 ZNF668Q96K58 619 aaPredicted RBP15.54■□□□□ 0.08
HDAC6-220ENST00000477528 FAM49AQ9H0Q0 323 aaPredicted RBP15.54■□□□□ 0.08
HDAC6-220ENST00000477528 LRP6O75581 1613 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 TRPM3Q9HCF6 1732 aaPredicted RBP15.54■□□□□ 0.08
HDAC6-220ENST00000477528 IQANK1A0A1B0GTG1 560 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 ASB14A6NK59 587 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 CASP5P51878 434 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 NOP14P78316 857 aaKnown RBP15.54■□□□□ 0.08
HDAC6-220ENST00000477528 PRAMEF18Q5VWM3 479 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 LMNTD2Q8IXW0 634 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 MAP2K7O14733 419 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 GARSP41250 739 aaKnown RBP15.54■□□□□ 0.08
HDAC6-220ENST00000477528 GPR162Q16538 588 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 C1orf186Q6ZWK4 172 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 ETNPPLQ8TBG4 499 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 NSMCE1Q8WV22 266 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 LRRC4Q9HBW1 653 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 OSGEPQ9NPF4 335 aa15.54■□□□□ 0.08
HDAC6-220ENST00000477528 TOPORSQ9NS56 1045 aaPredicted RBP15.54■□□□□ 0.08
HDAC6-220ENST00000477528 ZC3H11AO75152 810 aaKnown RBP eCLIP15.53■□□□□ 0.081e-6■■■■■ 36.9
HDAC6-220ENST00000477528 KYAT1Q16773 422 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms