RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 ZMAT2Q96NC0 199 aaKnown RBP18.33■□□□□ 0.52
USP40-212ENST00000473191 PPP1R10Q96QC0 940 aaKnown RBP18.33■□□□□ 0.52
USP40-212ENST00000473191 CLSTN3Q9BQT9 956 aa18.33■□□□□ 0.52
USP40-212ENST00000473191 STK24Q9Y6E0 443 aa18.33■□□□□ 0.52
USP40-212ENST00000473191 ZNF318Q5VUA4 2279 aa18.32■□□□□ 0.52
USP40-212ENST00000473191 I3L4J1 428 aa18.32■□□□□ 0.52
USP40-212ENST00000473191 DMP1Q13316 513 aaPredicted RBP18.32■□□□□ 0.52
USP40-212ENST00000473191 TMEM119Q4V9L6 283 aa18.32■□□□□ 0.52
USP40-212ENST00000473191 ZDHHC14Q8IZN3 488 aa18.32■□□□□ 0.52
USP40-212ENST00000473191 PRSS33Q8NF86 280 aa18.32■□□□□ 0.52
USP40-212ENST00000473191 ST13P5Q8NFI4 369 aaPredicted RBP18.32■□□□□ 0.52
USP40-212ENST00000473191 MFSD14AQ96MC6 490 aa18.32■□□□□ 0.52
USP40-212ENST00000473191 HAPLN2Q9GZV7 340 aa18.32■□□□□ 0.52
USP40-212ENST00000473191 TMEM134Q9H6X4 195 aa18.32■□□□□ 0.52
USP40-212ENST00000473191 SSX2IPQ9Y2D8 614 aa18.32■□□□□ 0.52
USP40-212ENST00000473191 SF3B1O75533 1304 aaKnown RBP eCLIP18.31■□□□□ 0.52
USP40-212ENST00000473191 PLA2G4BP0C869 781 aa18.31■□□□□ 0.52
USP40-212ENST00000473191 HARSP12081 509 aaKnown RBP18.31■□□□□ 0.52
USP40-212ENST00000473191 PROZP22891 400 aa18.31■□□□□ 0.52
USP40-212ENST00000473191 GUCY2CP25092 1073 aa18.31■□□□□ 0.52
USP40-212ENST00000473191 MCM2P49736 904 aa18.31■□□□□ 0.52
USP40-212ENST00000473191 ZNF568Q3ZCX4 644 aa18.31■□□□□ 0.52
USP40-212ENST00000473191 ALKAL1Q6UXT8 129 aa18.31■□□□□ 0.52
USP40-212ENST00000473191 RSPO2Q6UXX9 243 aaPredicted RBP18.31■□□□□ 0.52
USP40-212ENST00000473191 C15orf39Q6ZRI6 1047 aa18.31■□□□□ 0.52
USP40-212ENST00000473191 CCDC149Q6ZUS6 474 aa18.31■□□□□ 0.52
USP40-212ENST00000473191 DRC1Q96MC2 740 aa18.31■□□□□ 0.52
USP40-212ENST00000473191 PHOX2BQ99453 314 aa18.31■□□□□ 0.52
USP40-212ENST00000473191 FNIP2Q9P278 1114 aa18.31■□□□□ 0.52
USP40-212ENST00000473191 SORCS3Q9UPU3 1222 aa18.31■□□□□ 0.52
USP40-212ENST00000473191 USTQ9Y2C2 406 aa18.31■□□□□ 0.52
USP40-212ENST00000473191 MTCL1Q9Y4B5 1905 aaKnown RBP18.31■□□□□ 0.52
USP40-212ENST00000473191 SMIM28A0A1B0GU29 152 aa18.3■□□□□ 0.52
USP40-212ENST00000473191 HOXD11P31277 338 aaPredicted RBP18.3■□□□□ 0.52
USP40-212ENST00000473191 GRM5P41594 1212 aa18.3■□□□□ 0.52
USP40-212ENST00000473191 BRCC3P46736 316 aa18.3■□□□□ 0.52
USP40-212ENST00000473191 CUL4AQ13619 759 aa18.3■□□□□ 0.52
USP40-212ENST00000473191 DHX8Q14562 1220 aaKnown RBP18.3■□□□□ 0.52
USP40-212ENST00000473191 UPP1Q16831 310 aa18.3■□□□□ 0.52
USP40-212ENST00000473191 FBXL6Q8N531 539 aa18.3■□□□□ 0.52
USP40-212ENST00000473191 TMEM161BQ8NDZ6 487 aa18.3■□□□□ 0.52
USP40-212ENST00000473191 CMASQ8NFW8 434 aaPredicted RBP18.3■□□□□ 0.52
USP40-212ENST00000473191 RSAD2Q8WXG1 361 aa18.3■□□□□ 0.52
USP40-212ENST00000473191 TTPALQ9BTX7 342 aa18.3■□□□□ 0.52
USP40-212ENST00000473191 MRPL4Q9BYD3 311 aaKnown RBP18.3■□□□□ 0.52
USP40-212ENST00000473191 NT5C3AQ9H0P0 336 aa18.3■□□□□ 0.52
USP40-212ENST00000473191 BLOC1S4Q9NUP1 217 aa18.3■□□□□ 0.52
USP40-212ENST00000473191 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.3■□□□□ 0.52
USP40-212ENST00000473191 PLS3P13797 630 aa18.29■□□□□ 0.52
USP40-212ENST00000473191 NHLH1Q02575 133 aa18.29■□□□□ 0.52
USP40-212ENST00000473191 MTMR3Q13615 1198 aa18.29■□□□□ 0.52
USP40-212ENST00000473191 SF3A1Q15459 793 aaKnown RBP18.29■□□□□ 0.52
USP40-212ENST00000473191 PSMD5Q16401 504 aa18.29■□□□□ 0.52
USP40-212ENST00000473191 XKR4Q5GH76 650 aa18.29■□□□□ 0.52
USP40-212ENST00000473191 SPECC1Q5M775 1068 aa18.29■□□□□ 0.52
USP40-212ENST00000473191 ARL6IP4Q66PJ3 421 aaKnown RBP18.29■□□□□ 0.52
USP40-212ENST00000473191 FAM173BQ6P4H8 233 aa18.29■□□□□ 0.52
USP40-212ENST00000473191 PIK3R5Q8WYR1 880 aa18.29■□□□□ 0.52
USP40-212ENST00000473191 SMG7Q92540 1137 aaKnown RBP18.29■□□□□ 0.52
USP40-212ENST00000473191 C18orf25Q96B23 403 aaPredicted RBP18.29■□□□□ 0.52
USP40-212ENST00000473191 MYADMQ96S97 322 aa18.29■□□□□ 0.52
USP40-212ENST00000473191 NTPCRQ9BSD7 190 aaKnown RBP18.29■□□□□ 0.52
USP40-212ENST00000473191 WDR6Q9NNW5 1121 aaKnown RBP18.29■□□□□ 0.52
USP40-212ENST00000473191 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.29■□□□□ 0.52
USP40-212ENST00000473191 CLIC4Q9Y696 253 aa18.29■□□□□ 0.52
USP40-212ENST00000473191 MYH11P35749 1972 aa18.29■□□□□ 0.52
USP40-212ENST00000473191 DOCK6Q96HP0 2047 aa18.28■□□□□ 0.52
USP40-212ENST00000473191 VPS37CA5D8V6 355 aaPredicted RBP18.28■□□□□ 0.52
USP40-212ENST00000473191 NARSO43776 548 aaKnown RBP18.28■□□□□ 0.52
USP40-212ENST00000473191 B3GAT3O94766 335 aa18.28■□□□□ 0.52
USP40-212ENST00000473191 MAPTP10636 758 aaKnown RBP18.28■□□□□ 0.52
USP40-212ENST00000473191 TKTP29401 623 aaKnown RBP18.28■□□□□ 0.52
USP40-212ENST00000473191 KARSQ15046 597 aaKnown RBP18.28■□□□□ 0.52
USP40-212ENST00000473191 MPZL3Q6UWV2 235 aa18.28■□□□□ 0.52
USP40-212ENST00000473191 USP49Q70CQ1 688 aa18.28■□□□□ 0.52
USP40-212ENST00000473191 SNX27Q96L92 541 aa18.28■□□□□ 0.52
USP40-212ENST00000473191 ANKFY1Q9P2R3 1169 aa18.28■□□□□ 0.52
USP40-212ENST00000473191 CLUHO75153 1309 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 PAPLNO95428 1278 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 FGFR3P22607 806 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 NTHL1P78549 312 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 SPAG1Q07617 926 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 TCF15Q12870 199 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 MCM6Q14566 821 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 OTOP3Q7RTS5 596 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 ALYREFQ86V81 257 aaKnown RBP18.27■□□□□ 0.52
USP40-212ENST00000473191 SUGP1Q8IWZ8 645 aaKnown RBP18.27■□□□□ 0.52
USP40-212ENST00000473191 GPR65Q8IYL9 337 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 PLCD3Q8N3E9 789 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 SPIRE2Q8WWL2 714 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 CDK5RAP3Q96JB5 506 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 REEP2Q9BRK0 252 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 TCHPQ9BT92 498 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 CCDC94Q9BW85 323 aaPredicted RBP18.27■□□□□ 0.52
USP40-212ENST00000473191 C17orf75Q9HAS0 396 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 KCNK12Q9HB15 430 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 FOXD4L1Q9NU39 408 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 FBXW11Q9UKB1 542 aa18.27■□□□□ 0.52
USP40-212ENST00000473191 RBM19Q9Y4C8 960 aaKnown RBP18.27■□□□□ 0.52
USP40-212ENST00000473191 TMEM189-UBE2V1I3L0A0 370 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms