RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 SLC5A4Q9NY91 659 aa7.54□□□□□ -1.2
CCDC39-202ENST00000471307 ATP8A1Q9Y2Q0 1164 aa7.54□□□□□ -1.2
CCDC39-202ENST00000471307 GPR45Q9Y5Y3 372 aa7.54□□□□□ -1.2
CCDC39-202ENST00000471307 HLA-DOAP06340 250 aa7.53□□□□□ -1.2
CCDC39-202ENST00000471307 ZFP36P26651 326 aaKnown RBP7.53□□□□□ -1.2
CCDC39-202ENST00000471307 RNASE9P60153 205 aaKnown RBP7.53□□□□□ -1.2
CCDC39-202ENST00000471307 BEAN1Q3B7T3 259 aa7.53□□□□□ -1.2
CCDC39-202ENST00000471307 LAIR1Q6GTX8 287 aa7.53□□□□□ -1.2
CCDC39-202ENST00000471307 DDX42Q86XP3 938 aaKnown RBP eCLIP7.53□□□□□ -1.2
CCDC39-202ENST00000471307 RNF169Q8NCN4 708 aa7.53□□□□□ -1.2
CCDC39-202ENST00000471307 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.53□□□□□ -1.2
CCDC39-202ENST00000471307 SLC35B2Q8TB61 432 aa7.53□□□□□ -1.2
CCDC39-202ENST00000471307 MLST8Q9BVC4 326 aa7.53□□□□□ -1.2
CCDC39-202ENST00000471307 TMEM140Q9NV12 185 aa7.53□□□□□ -1.2
CCDC39-202ENST00000471307 CADPSQ9ULU8 1353 aa7.52□□□□□ -1.21
CCDC39-202ENST00000471307 DRGXA6NNA5 263 aa7.52□□□□□ -1.21
CCDC39-202ENST00000471307 NCR1O76036 304 aa7.52□□□□□ -1.21
CCDC39-202ENST00000471307 RHOBTB3O94955 611 aa7.52□□□□□ -1.21
CCDC39-202ENST00000471307 OSMP13725 252 aa7.52□□□□□ -1.21
CCDC39-202ENST00000471307 GSPT1P15170 499 aaKnown RBP7.52□□□□□ -1.21
CCDC39-202ENST00000471307 FAM189BP81408 668 aa7.52□□□□□ -1.21
CCDC39-202ENST00000471307 NOMO1Q15155 1222 aa7.52□□□□□ -1.21
CCDC39-202ENST00000471307 OTUD7BQ6GQQ9 843 aa7.52□□□□□ -1.21
CCDC39-202ENST00000471307 CNTD1Q8N815 330 aa7.52□□□□□ -1.21
CCDC39-202ENST00000471307 TTPALQ9BTX7 342 aa7.52□□□□□ -1.21
CCDC39-202ENST00000471307 SENP6Q9GZR1 1112 aaPredicted RBP7.52□□□□□ -1.21
CCDC39-202ENST00000471307 DMRT3Q9NQL9 472 aa7.52□□□□□ -1.21
CCDC39-202ENST00000471307 DKK2Q9UBU2 259 aa7.52□□□□□ -1.21
CCDC39-202ENST00000471307 DMRT1Q9Y5R6 373 aa7.52□□□□□ -1.21
CCDC39-202ENST00000471307 RSF1Q96T23 1441 aaPredicted RBP7.52□□□□□ -1.21
CCDC39-202ENST00000471307 B3GALT2O43825 422 aa7.51□□□□□ -1.21
CCDC39-202ENST00000471307 PTTG1IPP53801 180 aa7.51□□□□□ -1.21
CCDC39-202ENST00000471307 INHBEP58166 350 aa7.51□□□□□ -1.21
CCDC39-202ENST00000471307 SMN1Q16637 294 aaKnown RBP7.51□□□□□ -1.21
CCDC39-202ENST00000471307 CRB2Q5IJ48 1285 aa7.51□□□□□ -1.21
CCDC39-202ENST00000471307 AGAP9Q5VTM2 703 aa7.51□□□□□ -1.21
CCDC39-202ENST00000471307 AFMIDQ63HM1 303 aa7.51□□□□□ -1.21
CCDC39-202ENST00000471307 METRNLQ641Q3 311 aa7.51□□□□□ -1.21
CCDC39-202ENST00000471307 ARHGEF19Q8IW93 802 aa7.51□□□□□ -1.21
CCDC39-202ENST00000471307 RHOT2Q8IXI1 618 aa7.51□□□□□ -1.21
CCDC39-202ENST00000471307 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.51□□□□□ -1.21
CCDC39-202ENST00000471307 ATP11BQ9Y2G3 1177 aa7.51□□□□□ -1.21
CCDC39-202ENST00000471307 PCDHGA2Q9Y5H1 932 aa7.51□□□□□ -1.21
CCDC39-202ENST00000471307 SMARCA4P51532 1647 aa7.51□□□□□ -1.21
CCDC39-202ENST00000471307 MROH2BQ7Z745 1585 aa7.5□□□□□ -1.21
CCDC39-202ENST00000471307 CENPVL1A0A0U1RR11 272 aa7.5□□□□□ -1.21
CCDC39-202ENST00000471307 ATP5JP18859 108 aa7.5□□□□□ -1.21
CCDC39-202ENST00000471307 MXRA7P84157 204 aa7.5□□□□□ -1.21
CCDC39-202ENST00000471307 INAVAQ3KP66 663 aa7.5□□□□□ -1.21
CCDC39-202ENST00000471307 PDCD4Q53EL6 469 aaKnown RBP7.5□□□□□ -1.21
CCDC39-202ENST00000471307 MRI1Q9BV20 369 aa7.5□□□□□ -1.21
CCDC39-202ENST00000471307 REXO4Q9GZR2 422 aaKnown RBP7.5□□□□□ -1.21
CCDC39-202ENST00000471307 MANSC1Q9H8J5 431 aa7.5□□□□□ -1.21
CCDC39-202ENST00000471307 FPGT-TNNI3KV9GXZ4 949 aa7.5□□□□□ -1.21
CCDC39-202ENST00000471307 SBNO2Q9Y2G9 1366 aa7.49□□□□□ -1.21
CCDC39-202ENST00000471307 MARCH11A6NNE9 402 aa7.49□□□□□ -1.21
CCDC39-202ENST00000471307 ZNF185O15231 689 aa7.49□□□□□ -1.21
CCDC39-202ENST00000471307 GCP02774 474 aa7.49□□□□□ -1.21
CCDC39-202ENST00000471307 RAP2AP10114 183 aa7.49□□□□□ -1.21
CCDC39-202ENST00000471307 WASP42768 502 aa7.49□□□□□ -1.21
CCDC39-202ENST00000471307 CHN2P52757 468 aa7.49□□□□□ -1.21
CCDC39-202ENST00000471307 C11orf21Q9P2W6 132 aa7.49□□□□□ -1.21
CCDC39-202ENST00000471307 AJAP1Q9UKB5 411 aaPredicted RBP7.49□□□□□ -1.21
CCDC39-202ENST00000471307 PACSIN3Q9UKS6 424 aa7.49□□□□□ -1.21
CCDC39-202ENST00000471307 SIK3Q9Y2K2 1263 aa7.49□□□□□ -1.21
CCDC39-202ENST00000471307 USP15Q9Y4E8 981 aaPredicted RBP7.49□□□□□ -1.21
CCDC39-202ENST00000471307 EIF4G1Q04637 1599 aaKnown RBP7.49□□□□□ -1.21
CCDC39-202ENST00000471307 PNPLA7Q6ZV29 1317 aa7.49□□□□□ -1.21
CCDC39-202ENST00000471307 GRID2IPA4D2P6 1211 aa7.48□□□□□ -1.21
CCDC39-202ENST00000471307 NDUFA10O95299 355 aa7.48□□□□□ -1.21
CCDC39-202ENST00000471307 POMCP01189 267 aa7.48□□□□□ -1.21
CCDC39-202ENST00000471307 KRT85P78386 507 aa7.48□□□□□ -1.21
CCDC39-202ENST00000471307 BLOC1S1P78537 153 aa7.48□□□□□ -1.21
CCDC39-202ENST00000471307 SEPT2Q15019 361 aa7.48□□□□□ -1.21
CCDC39-202ENST00000471307 SEM1Q6ZVN7 128 aa7.48□□□□□ -1.21
CCDC39-202ENST00000471307 FUBP3Q96I24 572 aaKnown RBP eCLIP7.48□□□□□ -1.21
CCDC39-202ENST00000471307 AGAP2Q99490 1192 aa7.48□□□□□ -1.21
CCDC39-202ENST00000471307 SAP30BPQ9UHR5 308 aaKnown RBP7.48□□□□□ -1.21
CCDC39-202ENST00000471307 DNM3Q9UQ16 869 aa7.48□□□□□ -1.21
CCDC39-202ENST00000471307 COL4A3Q01955 1670 aa7.47□□□□□ -1.21
CCDC39-202ENST00000471307 GPR32O75388 356 aa7.47□□□□□ -1.21
CCDC39-202ENST00000471307 CFIP05156 583 aa7.47□□□□□ -1.21
CCDC39-202ENST00000471307 DDX6P26196 483 aaKnown RBP eCLIP7.47□□□□□ -1.21
CCDC39-202ENST00000471307 ALDH1A3P47895 512 aa7.47□□□□□ -1.21
CCDC39-202ENST00000471307 SLC6A9P48067 706 aa7.47□□□□□ -1.21
CCDC39-202ENST00000471307 GUCY1B3Q02153 619 aa7.47□□□□□ -1.21
CCDC39-202ENST00000471307 VRK3Q8IV63 474 aa7.47□□□□□ -1.21
CCDC39-202ENST00000471307 CBARPQ8N350 705 aaPredicted RBP7.47□□□□□ -1.21
CCDC39-202ENST00000471307 CPEB3Q8NE35 698 aaKnown RBP7.47□□□□□ -1.21
CCDC39-202ENST00000471307 NEU1Q99519 415 aa7.47□□□□□ -1.21
CCDC39-202ENST00000471307 C7orf25Q9BPX7 421 aa7.47□□□□□ -1.21
CCDC39-202ENST00000471307 TOR3AQ9H497 397 aa7.47□□□□□ -1.21
CCDC39-202ENST00000471307 SERHL2Q9H4I8 314 aa7.47□□□□□ -1.21
CCDC39-202ENST00000471307 CYP4F11Q9HBI6 524 aa7.47□□□□□ -1.21
CCDC39-202ENST00000471307 WNT10BO00744 389 aa7.46□□□□□ -1.22
CCDC39-202ENST00000471307 ALAS1P13196 640 aa7.46□□□□□ -1.22
CCDC39-202ENST00000471307 ZEB1P37275 1124 aaPredicted RBP7.46□□□□□ -1.22
CCDC39-202ENST00000471307 AVPR1BP47901 424 aa7.46□□□□□ -1.22
CCDC39-202ENST00000471307 RAP2BP61225 183 aa7.46□□□□□ -1.22
CCDC39-202ENST00000471307 UBXN2BQ14CS0 331 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms