RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 EPCAMP16422 314 aa17.18■□□□□ 0.34
HDAC6-218ENST00000470942 HOXB8P17481 243 aaPredicted RBP17.18■□□□□ 0.34
HDAC6-218ENST00000470942 ZP2Q05996 745 aa17.18■□□□□ 0.34
HDAC6-218ENST00000470942 PKP1Q13835 747 aa17.18■□□□□ 0.34
HDAC6-218ENST00000470942 NOLC1Q14978 699 aaKnown RBP eCLIP17.18■□□□□ 0.34
HDAC6-218ENST00000470942 USP41Q3LFD5 358 aa17.18■□□□□ 0.34
HDAC6-218ENST00000470942 TPRNQ4KMQ1 711 aa17.18■□□□□ 0.34
HDAC6-218ENST00000470942 SYCE2Q6PIF2 218 aa17.18■□□□□ 0.34
HDAC6-218ENST00000470942 ZPBP2Q6X784 338 aa17.18■□□□□ 0.34
HDAC6-218ENST00000470942 PPFIBP1Q86W92 1011 aa17.18■□□□□ 0.34
HDAC6-218ENST00000470942 ADHFE1Q8IWW8 467 aa17.18■□□□□ 0.34
HDAC6-218ENST00000470942 PDILTQ8N807 584 aa17.18■□□□□ 0.34
HDAC6-218ENST00000470942 HASPINQ8TF76 798 aa17.18■□□□□ 0.34
HDAC6-218ENST00000470942 GPR62Q9BZJ7 368 aa17.18■□□□□ 0.34
HDAC6-218ENST00000470942 TBX20Q9UMR3 447 aa17.18■□□□□ 0.34
HDAC6-218ENST00000470942 SMIM28A0A1B0GU29 152 aa17.17■□□□□ 0.34
HDAC6-218ENST00000470942 SPDYE4A6NLX3 237 aa17.17■□□□□ 0.34
HDAC6-218ENST00000470942 LILRB3O75022 631 aa17.17■□□□□ 0.34
HDAC6-218ENST00000470942 BRD1O95696 1058 aa17.17■□□□□ 0.34
HDAC6-218ENST00000470942 CNPP09543 421 aaKnown RBP17.17■□□□□ 0.34
HDAC6-218ENST00000470942 SCP2P22307 547 aa17.17■□□□□ 0.34
HDAC6-218ENST00000470942 NMT1P30419 496 aaKnown RBP17.17■□□□□ 0.34
HDAC6-218ENST00000470942 LIG4P49917 911 aa17.17■□□□□ 0.34
HDAC6-218ENST00000470942 NAB2Q15742 525 aa17.17■□□□□ 0.34
HDAC6-218ENST00000470942 SEZ6Q53EL9 994 aa17.17■□□□□ 0.34
HDAC6-218ENST00000470942 KIAA0319Q5VV43 1072 aa17.17■□□□□ 0.34
HDAC6-218ENST00000470942 RNF168Q8IYW5 571 aaPredicted RBP17.17■□□□□ 0.34
HDAC6-218ENST00000470942 SLC22A17Q8WUG5 538 aa17.17■□□□□ 0.34
HDAC6-218ENST00000470942 DDX12PQ92771 950 aa17.17■□□□□ 0.34
HDAC6-218ENST00000470942 B3GALT6Q96L58 329 aa17.17■□□□□ 0.34
HDAC6-218ENST00000470942 PPP1R10Q96QC0 940 aaKnown RBP17.17■□□□□ 0.34
HDAC6-218ENST00000470942 POP1Q99575 1024 aaKnown RBP17.17■□□□□ 0.34
HDAC6-218ENST00000470942 S1PR5Q9H228 398 aa17.17■□□□□ 0.34
HDAC6-218ENST00000470942 A0A087X0B3 334 aa17.16■□□□□ 0.34
HDAC6-218ENST00000470942 MYMKA6NI61 221 aa17.16■□□□□ 0.34
HDAC6-218ENST00000470942 HNRNPDLO14979 420 aaKnown RBP17.16■□□□□ 0.34
HDAC6-218ENST00000470942 CUTAO60888 179 aa17.16■□□□□ 0.34
HDAC6-218ENST00000470942 KIF4AO95239 1232 aa17.16■□□□□ 0.34
HDAC6-218ENST00000470942 EFEMP2O95967 443 aa17.16■□□□□ 0.34
HDAC6-218ENST00000470942 DSG1Q02413 1049 aa17.16■□□□□ 0.34
HDAC6-218ENST00000470942 CES5AQ6NT32 575 aa17.16■□□□□ 0.34
HDAC6-218ENST00000470942 ALKAL1Q6UXT8 129 aa17.16■□□□□ 0.34
HDAC6-218ENST00000470942 C12orf76Q8N812 135 aaPredicted RBP17.16■□□□□ 0.34
HDAC6-218ENST00000470942 RIN2Q8WYP3 895 aaPredicted RBP17.16■□□□□ 0.34
HDAC6-218ENST00000470942 SNX27Q96L92 541 aa17.16■□□□□ 0.34
HDAC6-218ENST00000470942 DZANK1Q9NVP4 752 aa17.16■□□□□ 0.34
HDAC6-218ENST00000470942 SF3B1O75533 1304 aaKnown RBP eCLIP17.16■□□□□ 0.347e-9■■■■■ 132.1
HDAC6-218ENST00000470942 PLXNA3P51805 1871 aa17.16■□□□□ 0.34
HDAC6-218ENST00000470942 C19orf67A6NJJ6 358 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 ADH1AP07327 375 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 IDEP14735 1019 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 ABCD1P33897 745 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 CLCN4P51793 760 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 CLCNKBP51801 687 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 GTF2BQ00403 316 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 MCL1Q07820 350 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 ZC2HC1CQ53FD0 456 aaPredicted RBP17.15■□□□□ 0.34
HDAC6-218ENST00000470942 XKR4Q5GH76 650 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 RARS2Q5T160 578 aaKnown RBP17.15■□□□□ 0.34
HDAC6-218ENST00000470942 FAM171A1Q5VUB5 890 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 SFR1Q86XK3 245 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 CEP57Q86XR8 500 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 UROC1Q96N76 676 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 GOLGA2P5Q9HBQ8 144 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 CHST7Q9NS84 486 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 SLC38A7Q9NVC3 462 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 CFAP45Q9UL16 551 aa17.15■□□□□ 0.34
HDAC6-218ENST00000470942 PDCD11Q14690 1871 aaKnown RBP17.15■□□□□ 0.34
HDAC6-218ENST00000470942 TEX28O15482 410 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 GAP43P17677 238 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 ME1P48163 572 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 DNM1Q05193 864 aaKnown RBP17.14■□□□□ 0.33
HDAC6-218ENST00000470942 ITIH3Q06033 890 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 ELAVL2Q12926 359 aaKnown RBP17.14■□□□□ 0.33
HDAC6-218ENST00000470942 CBX2Q14781 532 aaPredicted RBP17.14■□□□□ 0.33
HDAC6-218ENST00000470942 ATL3Q6DD88 541 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 DCLRE1AQ6PJP8 1040 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 GLYCTKQ8IVS8 523 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 KCNG4Q8TDN1 519 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 SUSD6Q92537 303 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 KHSRPQ92945 711 aaKnown RBP eCLIP17.14■□□□□ 0.33
HDAC6-218ENST00000470942 KCNN1Q92952 543 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 DNAJC19Q96DA6 116 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 FBXL18Q96ME1 805 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 ZMAT2Q96NC0 199 aaKnown RBP17.14■□□□□ 0.33
HDAC6-218ENST00000470942 FIZ1Q96SL8 496 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 PHF7Q9BWX1 381 aaPredicted RBP17.14■□□□□ 0.33
HDAC6-218ENST00000470942 HAPLN2Q9GZV7 340 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 EPHX3Q9H6B9 360 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 RXFP1Q9HBX9 757 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.14■□□□□ 0.33
HDAC6-218ENST00000470942 TBC1D7Q9P0N9 293 aa17.14■□□□□ 0.33
HDAC6-218ENST00000470942 MTCL1Q9Y4B5 1905 aaKnown RBP17.13■□□□□ 0.33
HDAC6-218ENST00000470942 B3GAT3O94766 335 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 PIGRP01833 764 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 CLTAP09496 248 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 CXCL8P10145 99 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 KCNE1P15382 129 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 SOX4Q06945 474 aaPredicted RBP17.13■□□□□ 0.33
HDAC6-218ENST00000470942 SLC10A6Q3KNW5 377 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms