RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 APOL5Q9BWW9 433 aa17.66■□□□□ 0.42
COL7A1-203ENST00000459756 GPR62Q9BZJ7 368 aa17.66■□□□□ 0.42
COL7A1-203ENST00000459756 CXCL16Q9H2A7 254 aa17.66■□□□□ 0.42
COL7A1-203ENST00000459756 ADAM7Q9H2U9 754 aa17.66■□□□□ 0.42
COL7A1-203ENST00000459756 RXFP1Q9HBX9 757 aa17.66■□□□□ 0.42
COL7A1-203ENST00000459756 CACNG4Q9UBN1 327 aa17.66■□□□□ 0.42
COL7A1-203ENST00000459756 SF3B1O75533 1304 aaKnown RBP eCLIP17.66■□□□□ 0.42
COL7A1-203ENST00000459756 LOC730098B7Z3J9 87 aa17.65■□□□□ 0.42
COL7A1-203ENST00000459756 ABCD1P33897 745 aa17.65■□□□□ 0.42
COL7A1-203ENST00000459756 CLCN4P51793 760 aa17.65■□□□□ 0.42
COL7A1-203ENST00000459756 NOLC1Q14978 699 aaKnown RBP eCLIP17.65■□□□□ 0.42
COL7A1-203ENST00000459756 XKR4Q5GH76 650 aa17.65■□□□□ 0.42
COL7A1-203ENST00000459756 RRAGBQ5VZM2 374 aa17.65■□□□□ 0.42
COL7A1-203ENST00000459756 ALKAL1Q6UXT8 129 aa17.65■□□□□ 0.42
COL7A1-203ENST00000459756 CEP120Q8N960 986 aa17.65■□□□□ 0.42
COL7A1-203ENST00000459756 FBXL18Q96ME1 805 aa17.65■□□□□ 0.42
COL7A1-203ENST00000459756 ZNF396Q96N95 335 aaPredicted RBP17.65■□□□□ 0.42
COL7A1-203ENST00000459756 NECTIN4Q96NY8 510 aa17.65■□□□□ 0.42
COL7A1-203ENST00000459756 ACAP3Q96P50 834 aa17.65■□□□□ 0.42
COL7A1-203ENST00000459756 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.65■□□□□ 0.42
COL7A1-203ENST00000459756 ANKFY1Q9P2R3 1169 aa17.65■□□□□ 0.42
COL7A1-203ENST00000459756 MYH15Q9Y2K3 1946 aa17.64■□□□□ 0.42
COL7A1-203ENST00000459756 SMIM28A0A1B0GU29 152 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 TEX28O15482 410 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 CLDN3O15551 220 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 DCXO43602 365 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 TRAK2O60296 914 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 KIF4AO95239 1232 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 C1RP00736 705 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 MTHFRP42898 656 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 OSTNP61366 133 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 CREMQ03060 361 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 ELAVL2Q12926 359 aaKnown RBP17.64■□□□□ 0.41
COL7A1-203ENST00000459756 STK38Q15208 465 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 GLRA4Q5JXX5 417 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 ELMSAN1Q6PJG2 1045 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 CCDC73Q6ZRK6 1079 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 BICD1Q96G01 975 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 ZBTB45Q96K62 511 aaPredicted RBP17.64■□□□□ 0.41
COL7A1-203ENST00000459756 B3GALT6Q96L58 329 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 RIPOR3Q96MK2 946 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 UROC1Q96N76 676 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 ZHX3Q9H4I2 956 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 SFXN1Q9H9B4 322 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 SLC38A7Q9NVC3 462 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 DPP7Q9UHL4 492 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 TRIP11Q15643 1979 aa17.64■□□□□ 0.41
COL7A1-203ENST00000459756 TMEM189-UBE2V1I3L0A0 370 aa17.63■□□□□ 0.41
COL7A1-203ENST00000459756 K7ENM7 598 aa17.63■□□□□ 0.41
COL7A1-203ENST00000459756 HARSP12081 509 aaKnown RBP17.63■□□□□ 0.41
COL7A1-203ENST00000459756 KCNE1P15382 129 aa17.63■□□□□ 0.41
COL7A1-203ENST00000459756 MCL1Q07820 350 aa17.63■□□□□ 0.41
COL7A1-203ENST00000459756 RARS2Q5T160 578 aaKnown RBP17.63■□□□□ 0.41
COL7A1-203ENST00000459756 DCLRE1AQ6PJP8 1040 aa17.63■□□□□ 0.41
COL7A1-203ENST00000459756 RNF135Q8IUD6 432 aa17.63■□□□□ 0.41
COL7A1-203ENST00000459756 C12orf76Q8N812 135 aaPredicted RBP17.63■□□□□ 0.41
COL7A1-203ENST00000459756 LINC00301Q8NCQ3 95 aa17.63■□□□□ 0.41
COL7A1-203ENST00000459756 HASPINQ8TF76 798 aa17.63■□□□□ 0.41
COL7A1-203ENST00000459756 RIN2Q8WYP3 895 aaPredicted RBP17.63■□□□□ 0.41
COL7A1-203ENST00000459756 RPGRIP1Q96KN7 1286 aa17.63■□□□□ 0.41
COL7A1-203ENST00000459756 SNX27Q96L92 541 aa17.63■□□□□ 0.41
COL7A1-203ENST00000459756 FNIP2Q9P278 1114 aa17.63■□□□□ 0.41
COL7A1-203ENST00000459756 TBX20Q9UMR3 447 aa17.63■□□□□ 0.41
COL7A1-203ENST00000459756 CITO14578 2027 aa17.62■□□□□ 0.41
COL7A1-203ENST00000459756 SPDYE4A6NLX3 237 aa17.62■□□□□ 0.41
COL7A1-203ENST00000459756 HNRNPDLO14979 420 aaKnown RBP17.62■□□□□ 0.41
COL7A1-203ENST00000459756 PPP6R2O75170 966 aa17.62■□□□□ 0.41
COL7A1-203ENST00000459756 GLUD1P00367 558 aa17.62■□□□□ 0.41
COL7A1-203ENST00000459756 PIGRP01833 764 aa17.62■□□□□ 0.41
COL7A1-203ENST00000459756 ZSCAN22P10073 491 aaPredicted RBP17.62■□□□□ 0.41
COL7A1-203ENST00000459756 MATR3P43243 847 aaKnown RBP eCLIP17.62■□□□□ 0.41
COL7A1-203ENST00000459756 LIG4P49917 911 aa17.62■□□□□ 0.41
COL7A1-203ENST00000459756 ATAT1Q5SQI0 421 aa17.62■□□□□ 0.41
COL7A1-203ENST00000459756 FAM171A1Q5VUB5 890 aa17.62■□□□□ 0.41
COL7A1-203ENST00000459756 SV2BQ7L1I2 683 aa17.62■□□□□ 0.41
COL7A1-203ENST00000459756 DDX27Q96GQ7 796 aaKnown RBP17.62■□□□□ 0.41
COL7A1-203ENST00000459756 TTPALQ9BTX7 342 aa17.62■□□□□ 0.41
COL7A1-203ENST00000459756 CNTN3Q9P232 1028 aa17.62■□□□□ 0.41
COL7A1-203ENST00000459756 SPTLC2O15270 562 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 GPR37L1O60883 481 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 B3GAT3O94766 335 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 YEATS4O95619 227 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 CLCNKBP51801 687 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 GTF2BQ00403 316 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 KYAT1Q16773 422 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 UPP1Q16831 310 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 HERC4Q5GLZ8 1057 aaPredicted RBP17.61■□□□□ 0.41
COL7A1-203ENST00000459756 TMEM31Q5JXX7 168 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 RTP2Q5QGT7 225 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 PDXDC1Q6P996 788 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 TMC5Q6UXY8 1006 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 HDAC7Q8WUI4 952 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 ZMAT2Q96NC0 199 aaKnown RBP17.61■□□□□ 0.41
COL7A1-203ENST00000459756 FIZ1Q96SL8 496 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 ST6GALNAC4Q9H4F1 302 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 MAN1C1Q9NR34 630 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 TFIP11Q9UBB9 837 aaKnown RBP17.61■□□□□ 0.41
COL7A1-203ENST00000459756 CDH22Q9UJ99 828 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 NR2E1Q9Y466 385 aa17.61■□□□□ 0.41
COL7A1-203ENST00000459756 TRIOO75962 3097 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms