RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 FAM86C2PA6NEL3 165 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 TEX28O15482 410 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 KIF4AO95239 1232 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 KRT18P05783 430 aaKnown RBP23.26■■□□□ 1.31
HMGB3-205ENST00000455596 COL9A1P20849 921 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 NCKAP1LP55160 1127 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 OSTNP61366 133 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 CEBPZQ03701 1054 aaKnown RBP23.26■■□□□ 1.31
HMGB3-205ENST00000455596 GLRA4Q5JXX5 417 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 SPECC1Q5M775 1068 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 HSCBQ8IWL3 235 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 GPR65Q8IYL9 337 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 HASPINQ8TF76 798 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 EPSTI1Q96J88 318 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 B3GALT6Q96L58 329 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 PPP1R10Q96QC0 940 aaKnown RBP23.26■■□□□ 1.31
HMGB3-205ENST00000455596 C11orf16Q9NQ32 467 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP23.26■■□□□ 1.31
HMGB3-205ENST00000455596 CCDC39Q9UFE4 941 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 MUTYHQ9UIF7 546 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 CDH22Q9UJ99 828 aa23.26■■□□□ 1.31
HMGB3-205ENST00000455596 ABLIM1O14639 778 aa23.25■■□□□ 1.31
HMGB3-205ENST00000455596 TOM1L1O75674 476 aa23.25■■□□□ 1.31
HMGB3-205ENST00000455596 FAM13AO94988 1023 aa23.25■■□□□ 1.31
HMGB3-205ENST00000455596 BRD1O95696 1058 aa23.25■■□□□ 1.31
HMGB3-205ENST00000455596 HERC4Q5GLZ8 1057 aaPredicted RBP23.25■■□□□ 1.31
HMGB3-205ENST00000455596 ZPBP2Q6X784 338 aa23.25■■□□□ 1.31
HMGB3-205ENST00000455596 ACAP3Q96P50 834 aa23.25■■□□□ 1.31
HMGB3-205ENST00000455596 POMKQ9H5K3 350 aa23.25■■□□□ 1.31
HMGB3-205ENST00000455596 NR2E1Q9Y466 385 aa23.25■■□□□ 1.31
HMGB3-205ENST00000455596 GLUD1P00367 558 aa23.24■■□□□ 1.31
HMGB3-205ENST00000455596 HARSP12081 509 aaKnown RBP23.24■■□□□ 1.31
HMGB3-205ENST00000455596 DDIT3P35638 169 aa23.24■■□□□ 1.31
HMGB3-205ENST00000455596 TXLNAP40222 546 aa23.24■■□□□ 1.31
HMGB3-205ENST00000455596 CREMQ03060 361 aa23.24■■□□□ 1.31
HMGB3-205ENST00000455596 ELAVL2Q12926 359 aaKnown RBP23.24■■□□□ 1.31
HMGB3-205ENST00000455596 NOLC1Q14978 699 aaKnown RBP eCLIP23.24■■□□□ 1.31
HMGB3-205ENST00000455596 ATAT1Q5SQI0 421 aa23.24■■□□□ 1.31
HMGB3-205ENST00000455596 KANK3Q6NY19 840 aa23.24■■□□□ 1.31
HMGB3-205ENST00000455596 ELMSAN1Q6PJG2 1045 aa23.24■■□□□ 1.31
HMGB3-205ENST00000455596 USP49Q70CQ1 688 aa23.24■■□□□ 1.31
HMGB3-205ENST00000455596 HAUS6Q7Z4H7 955 aa23.24■■□□□ 1.31
HMGB3-205ENST00000455596 MYCT1Q8N699 235 aa23.24■■□□□ 1.31
HMGB3-205ENST00000455596 RIN2Q8WYP3 895 aaPredicted RBP23.24■■□□□ 1.31
HMGB3-205ENST00000455596 ZBTB45Q96K62 511 aaPredicted RBP23.24■■□□□ 1.31
HMGB3-205ENST00000455596 UROC1Q96N76 676 aa23.24■■□□□ 1.31
HMGB3-205ENST00000455596 USP28Q96RU2 1077 aa23.24■■□□□ 1.31
HMGB3-205ENST00000455596 PARVGQ9HBI0 331 aa23.24■■□□□ 1.31
HMGB3-205ENST00000455596 FNIP2Q9P278 1114 aa23.24■■□□□ 1.31
HMGB3-205ENST00000455596 ANKFY1Q9P2R3 1169 aa23.24■■□□□ 1.31
HMGB3-205ENST00000455596 DPP7Q9UHL4 492 aa23.24■■□□□ 1.31
HMGB3-205ENST00000455596 MORC2Q9Y6X9 1032 aaPredicted RBP23.24■■□□□ 1.31
HMGB3-205ENST00000455596 SMIM28A0A1B0GU29 152 aa23.23■■□□□ 1.31
HMGB3-205ENST00000455596 WEE2P0C1S8 567 aa23.23■■□□□ 1.31
HMGB3-205ENST00000455596 SCP2P22307 547 aa23.23■■□□□ 1.31
HMGB3-205ENST00000455596 ZNF131P52739 623 aa23.23■■□□□ 1.31
HMGB3-205ENST00000455596 XKR4Q5GH76 650 aa23.23■■□□□ 1.31
HMGB3-205ENST00000455596 ALKAL1Q6UXT8 129 aa23.23■■□□□ 1.31
HMGB3-205ENST00000455596 TMC5Q6UXY8 1006 aa23.23■■□□□ 1.31
HMGB3-205ENST00000455596 KCNN1Q92952 543 aa23.23■■□□□ 1.31
HMGB3-205ENST00000455596 BICD1Q96G01 975 aa23.23■■□□□ 1.31
HMGB3-205ENST00000455596 SNX27Q96L92 541 aa23.23■■□□□ 1.31
HMGB3-205ENST00000455596 CLIC6Q96NY7 704 aa23.23■■□□□ 1.31
HMGB3-205ENST00000455596 ZHX3Q9H4I2 956 aa23.23■■□□□ 1.31
HMGB3-205ENST00000455596 MAN1C1Q9NR34 630 aa23.23■■□□□ 1.31
HMGB3-205ENST00000455596 SLC38A7Q9NVC3 462 aa23.23■■□□□ 1.31
HMGB3-205ENST00000455596 STK17AQ9UEE5 414 aa23.23■■□□□ 1.31
HMGB3-205ENST00000455596 TMEM189-UBE2V1I3L0A0 370 aa23.22■■□□□ 1.31
HMGB3-205ENST00000455596 K7ENM7 598 aa23.22■■□□□ 1.31
HMGB3-205ENST00000455596 CLDN3O15551 220 aa23.22■■□□□ 1.31
HMGB3-205ENST00000455596 TBCAO75347 108 aaKnown RBP23.22■■□□□ 1.31
HMGB3-205ENST00000455596 HSP90AA1P07900 732 aaKnown RBP23.22■■□□□ 1.31
HMGB3-205ENST00000455596 SP100P23497 879 aaPredicted RBP23.22■■□□□ 1.31
HMGB3-205ENST00000455596 MATR3P43243 847 aaKnown RBP eCLIP23.22■■□□□ 1.31
HMGB3-205ENST00000455596 SLC39A14Q15043 492 aa23.22■■□□□ 1.31
HMGB3-205ENST00000455596 FAM171A1Q5VUB5 890 aa23.22■■□□□ 1.31
HMGB3-205ENST00000455596 CEP57Q86XR8 500 aa23.22■■□□□ 1.31
HMGB3-205ENST00000455596 TTPALQ9BTX7 342 aa23.22■■□□□ 1.31
HMGB3-205ENST00000455596 TSHZ2Q9NRE2 1034 aa23.22■■□□□ 1.31
HMGB3-205ENST00000455596 PRR33A8MZF0 331 aa23.21■■□□□ 1.31
HMGB3-205ENST00000455596 TRAK2O60296 914 aa23.21■■□□□ 1.31
HMGB3-205ENST00000455596 C1RP00736 705 aa23.21■■□□□ 1.31
HMGB3-205ENST00000455596 CLCNKBP51801 687 aa23.21■■□□□ 1.31
HMGB3-205ENST00000455596 MCL1Q07820 350 aa23.21■■□□□ 1.31
HMGB3-205ENST00000455596 RTP2Q5QGT7 225 aa23.21■■□□□ 1.31
HMGB3-205ENST00000455596 RRAGBQ5VZM2 374 aa23.21■■□□□ 1.31
HMGB3-205ENST00000455596 DCLRE1AQ6PJP8 1040 aa23.21■■□□□ 1.31
HMGB3-205ENST00000455596 PRSS55Q6UWB4 352 aaPredicted RBP23.21■■□□□ 1.31
HMGB3-205ENST00000455596 GPR149Q86SP6 731 aa23.21■■□□□ 1.31
HMGB3-205ENST00000455596 GLYCTKQ8IVS8 523 aa23.21■■□□□ 1.31
HMGB3-205ENST00000455596 KRI1Q8N9T8 703 aaKnown RBP23.21■■□□□ 1.31
HMGB3-205ENST00000455596 GOLGA2P5Q9HBQ8 144 aa23.21■■□□□ 1.31
HMGB3-205ENST00000455596 MYO10Q9HD67 2058 aa23.21■■□□□ 1.31
HMGB3-205ENST00000455596 B3GAT3O94766 335 aa23.2■■□□□ 1.3
HMGB3-205ENST00000455596 PDIA4P13667 645 aaKnown RBP23.2■■□□□ 1.3
HMGB3-205ENST00000455596 RPL17P18621 184 aaKnown RBP23.2■■□□□ 1.3
HMGB3-205ENST00000455596 ABCD1P33897 745 aa23.2■■□□□ 1.3
HMGB3-205ENST00000455596 NASPP49321 788 aaPredicted RBP23.2■■□□□ 1.3
HMGB3-205ENST00000455596 LIG4P49917 911 aa23.2■■□□□ 1.3
HMGB3-205ENST00000455596 UPP1Q16831 310 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms