RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 C2CD4DB7Z1M9 353 aa16.74■□□□□ 0.27
CHD3-205ENST00000449744 KRT18P05783 430 aaKnown RBP16.74■□□□□ 0.27
CHD3-205ENST00000449744 MYBP10242 640 aa16.74■□□□□ 0.27
CHD3-205ENST00000449744 NAB2Q15742 525 aa16.74■□□□□ 0.27
CHD3-205ENST00000449744 PTPN21Q16825 1174 aa16.74■□□□□ 0.27
CHD3-205ENST00000449744 MPZL3Q6UWV2 235 aa16.74■□□□□ 0.27
CHD3-205ENST00000449744 C15orf39Q6ZRI6 1047 aa16.74■□□□□ 0.27
CHD3-205ENST00000449744 TRIM67Q6ZTA4 783 aa16.74■□□□□ 0.27
CHD3-205ENST00000449744 CCDC149Q6ZUS6 474 aa16.74■□□□□ 0.27
CHD3-205ENST00000449744 GPBP1Q86WP2 473 aa16.74■□□□□ 0.27
CHD3-205ENST00000449744 PLCD3Q8N3E9 789 aa16.74■□□□□ 0.27
CHD3-205ENST00000449744 INTS4Q96HW7 963 aaKnown RBP16.74■□□□□ 0.27
CHD3-205ENST00000449744 UROC1Q96N76 676 aa16.74■□□□□ 0.27
CHD3-205ENST00000449744 ACAP3Q96P50 834 aa16.74■□□□□ 0.27
CHD3-205ENST00000449744 PPP1R10Q96QC0 940 aaKnown RBP16.74■□□□□ 0.27
CHD3-205ENST00000449744 TTPALQ9BTX7 342 aa16.74■□□□□ 0.27
CHD3-205ENST00000449744 PTPRHQ9HD43 1115 aa16.74■□□□□ 0.27
CHD3-205ENST00000449744 FOXD4L1Q9NU39 408 aa16.74■□□□□ 0.27
CHD3-205ENST00000449744 ODF2LQ9ULJ1 636 aa16.74■□□□□ 0.27
CHD3-205ENST00000449744 K7ELQ4 463 aaPredicted RBP16.73■□□□□ 0.27
CHD3-205ENST00000449744 B3GAT3O94766 335 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 FAM13AO94988 1023 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 PLCG1P19174 1290 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 SYT1P21579 422 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 MATR3P43243 847 aaKnown RBP eCLIP16.73■□□□□ 0.273e-8■■■□□ 14.8
CHD3-205ENST00000449744 GRIN1Q05586 938 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 KARSQ15046 597 aaKnown RBP16.73■□□□□ 0.27
CHD3-205ENST00000449744 RTP2Q5QGT7 225 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 PDXDC1Q6P996 788 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 DCLRE1AQ6PJP8 1040 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 PRSS55Q6UWB4 352 aaPredicted RBP16.73■□□□□ 0.27
CHD3-205ENST00000449744 TMEM161BQ8NDZ6 487 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 HDAC7Q8WUI4 952 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 ACSF2Q96CM8 615 aaPredicted RBP16.73■□□□□ 0.27
CHD3-205ENST00000449744 BICD1Q96G01 975 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 MFSD14AQ96MC6 490 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 PLEKHA4Q9H4M7 779 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 SLC38A7Q9NVC3 462 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 ANKFY1Q9P2R3 1169 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 USTQ9Y2C2 406 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 CLIC4Q9Y696 253 aa16.73■□□□□ 0.27
CHD3-205ENST00000449744 MUC6Q6W4X9 2439 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 MYH11P35749 1972 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 SMIM28A0A1B0GU29 152 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 CCDC195A0A1B0GUA6 201 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 TMEM221A6NGB7 291 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 TMEM189-UBE2V1I3L0A0 370 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 M0R296 226 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 TOM1L1O75674 476 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 C1RP00736 705 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 SPATA31D3P0C874 917 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 MAPTP10636 758 aaKnown RBP16.72■□□□□ 0.27
CHD3-205ENST00000449744 RPL17P18621 184 aaKnown RBP16.72■□□□□ 0.27
CHD3-205ENST00000449744 PROZP22891 400 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 CLCNKBP51801 687 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 SIGLEC14Q08ET2 396 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 RESTQ13127 1097 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 MCM6Q14566 821 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 PSMD5Q16401 504 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 ARSHQ5FYA8 562 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 CYP26C1Q6V0L0 522 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 ZPBP2Q6X784 338 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 SPATA31D4Q6ZUB0 917 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 HFE2Q6ZVN8 426 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 OTOP3Q7RTS5 596 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 MYCT1Q8N699 235 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 CMASQ8NFW8 434 aaPredicted RBP16.72■□□□□ 0.27
CHD3-205ENST00000449744 PIK3R5Q8WYR1 880 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 RAD54LQ92698 747 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 ZBTB45Q96K62 511 aaPredicted RBP16.72■□□□□ 0.27
CHD3-205ENST00000449744 REEP2Q9BRK0 252 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 CCSER1Q9C0I3 900 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 ZHX3Q9H4I2 956 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 PIDD1Q9HB75 910 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 CCDC39Q9UFE4 941 aa16.72■□□□□ 0.27
CHD3-205ENST00000449744 CLDN3O15551 220 aa16.71■□□□□ 0.27
CHD3-205ENST00000449744 TGM5O43548 720 aa16.71■□□□□ 0.27
CHD3-205ENST00000449744 TRAPPC3O43617 180 aa16.71■□□□□ 0.27
CHD3-205ENST00000449744 TBCAO75347 108 aaKnown RBP16.71■□□□□ 0.27
CHD3-205ENST00000449744 BRD1O95696 1058 aa16.71■□□□□ 0.27
CHD3-205ENST00000449744 MARCKSP29966 332 aaPredicted RBP16.71■□□□□ 0.27
CHD3-205ENST00000449744 TXLNAP40222 546 aa16.71■□□□□ 0.27
CHD3-205ENST00000449744 NCKAP1LP55160 1127 aa16.71■□□□□ 0.27
CHD3-205ENST00000449744 CEBPZQ03701 1054 aaKnown RBP16.71■□□□□ 0.27
CHD3-205ENST00000449744 NOLC1Q14978 699 aaKnown RBP eCLIP16.71■□□□□ 0.27
CHD3-205ENST00000449744 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.71■□□□□ 0.27
CHD3-205ENST00000449744 HAUS6Q7Z4H7 955 aa16.71■□□□□ 0.27
CHD3-205ENST00000449744 ZDHHC14Q8IZN3 488 aa16.71■□□□□ 0.27
CHD3-205ENST00000449744 LNX1Q8TBB1 728 aaPredicted RBP16.71■□□□□ 0.27
CHD3-205ENST00000449744 SMG7Q92540 1137 aaKnown RBP16.71■□□□□ 0.27
CHD3-205ENST00000449744 LARP4BQ92615 738 aaKnown RBP16.71■□□□□ 0.27
CHD3-205ENST00000449744 PBXIP1Q96AQ6 731 aa16.71■□□□□ 0.27
CHD3-205ENST00000449744 DDX27Q96GQ7 796 aaKnown RBP16.71■□□□□ 0.27
CHD3-205ENST00000449744 SNX27Q96L92 541 aa16.71■□□□□ 0.27
CHD3-205ENST00000449744 PARVGQ9HBI0 331 aa16.71■□□□□ 0.27
CHD3-205ENST00000449744 GOLGA2P5Q9HBQ8 144 aa16.71■□□□□ 0.27
CHD3-205ENST00000449744 BLOC1S4Q9NUP1 217 aa16.71■□□□□ 0.27
CHD3-205ENST00000449744 SORCS3Q9UPU3 1222 aa16.71■□□□□ 0.27
CHD3-205ENST00000449744 PLXNA3P51805 1871 aa16.71■□□□□ 0.27
CHD3-205ENST00000449744 K7ENM7 598 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms