RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 FAM30AQ9NZY2 134 aa7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 PNMA8BQ9ULN7 279 aaPredicted RBP7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 MYBBP1AQ9BQG0 1328 aaKnown RBP7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 RPLP2P05387 115 aaKnown RBP7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 POU2F2P09086 479 aa7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 ZSCAN20P17040 1043 aaPredicted RBP7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 DDCP20711 480 aa7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 FPR1P21462 350 aa7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 MGAT1P26572 445 aa7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 ALDH1A3P47895 512 aa7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 TARDBPQ13148 414 aaKnown RBP eCLIP7.41□□□□□ -1.224e-6■■■■□ 19.5
CCDC88A-206ENST00000430086 USP39Q53GS9 565 aaKnown RBP7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 EFCAB12Q6NXP0 572 aa7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 PRR18Q8N4B5 295 aa7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 ZFP28Q8NHY6 868 aa7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 IL17DQ8TAD2 202 aa7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 EXTL1Q92935 676 aa7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 MRI1Q9BV20 369 aa7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 ZNF180Q9UJW8 692 aa7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 PCDHB1Q9Y5F3 818 aa7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 ACTL7AQ9Y615 435 aa7.41□□□□□ -1.22
CCDC88A-206ENST00000430086 RFPL1O75677 317 aa7.4□□□□□ -1.22
CCDC88A-206ENST00000430086 PF4V1P10720 104 aa7.4□□□□□ -1.22
CCDC88A-206ENST00000430086 PDCP20941 246 aa7.4□□□□□ -1.22
CCDC88A-206ENST00000430086 RNF207Q6ZRF8 634 aa7.4□□□□□ -1.22
CCDC88A-206ENST00000430086 SEM1Q6ZVN7 128 aa7.4□□□□□ -1.22
CCDC88A-206ENST00000430086 SH3RF3Q8TEJ3 882 aaPredicted RBP7.4□□□□□ -1.22
CCDC88A-206ENST00000430086 TFAP2CQ92754 450 aa7.4□□□□□ -1.22
CCDC88A-206ENST00000430086 MRGPRX4Q96LA9 322 aa7.4□□□□□ -1.22
CCDC88A-206ENST00000430086 SPON1Q9HCB6 807 aa7.4□□□□□ -1.22
CCDC88A-206ENST00000430086 ZIM2Q9NZV7 527 aa7.4□□□□□ -1.22
CCDC88A-206ENST00000430086 MYRFQ9Y2G1 1151 aa7.4□□□□□ -1.22
CCDC88A-206ENST00000430086 PNPLA7Q6ZV29 1317 aa7.4□□□□□ -1.22
CCDC88A-206ENST00000430086 GRXCR1A8MXD5 290 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 DTNBO60941 627 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 CT47B1P0C2W7 299 aaPredicted RBP7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 RAP2AP10114 183 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 ATP5JP18859 108 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 CTXN1P60606 82 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 DSC2Q02487 901 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 RAB39AQ14964 217 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 NFE2Q16621 373 aaPredicted RBP7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 USP45Q70EL2 814 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 TTC7BQ86TV6 843 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 RSPH3Q86UC2 560 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 PLXDC1Q8IUK5 500 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 C1orf210Q8IVY1 113 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 RAVER1Q8IY67 606 aaKnown RBP7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 DRC7Q8IY82 874 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 IFI44Q8TCB0 444 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 NSUN6Q8TEA1 469 aaKnown RBP7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 JPH3Q8WXH2 748 aaPredicted RBP7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 PGBD4Q96DM1 585 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 NDC1Q9BTX1 674 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 CALCOCO1Q9P1Z2 691 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 SLC23A1Q9UHI7 598 aa7.39□□□□□ -1.23
CCDC88A-206ENST00000430086 TOB2Q14106 344 aaPredicted RBP7.38□□□□□ -1.23
CCDC88A-206ENST00000430086 NRN1LQ496H8 165 aa7.38□□□□□ -1.23
CCDC88A-206ENST00000430086 DACT2Q5SW24 774 aa7.38□□□□□ -1.23
CCDC88A-206ENST00000430086 ATXN7L2Q5T6C5 722 aaPredicted RBP7.38□□□□□ -1.23
CCDC88A-206ENST00000430086 OR10H5Q8NGA6 315 aa7.38□□□□□ -1.23
CCDC88A-206ENST00000430086 JDP2Q8WYK2 163 aa7.38□□□□□ -1.23
CCDC88A-206ENST00000430086 KAT5Q92993 513 aa7.38□□□□□ -1.23
CCDC88A-206ENST00000430086 TMX3Q96JJ7 454 aa7.38□□□□□ -1.23
CCDC88A-206ENST00000430086 DMRTA2Q96SC8 542 aa7.38□□□□□ -1.23
CCDC88A-206ENST00000430086 KRTAP4-9Q9BYQ8 210 aa7.38□□□□□ -1.23
CCDC88A-206ENST00000430086 CEP72Q9P209 647 aa7.38□□□□□ -1.23
CCDC88A-206ENST00000430086 EID1Q9Y6B2 187 aa7.38□□□□□ -1.23
CCDC88A-206ENST00000430086 TTBK1Q5TCY1 1321 aaPredicted RBP7.37□□□□□ -1.23
CCDC88A-206ENST00000430086 TRIM24O15164 1050 aa7.37□□□□□ -1.23
CCDC88A-206ENST00000430086 CYP2C19P33261 490 aa7.37□□□□□ -1.23
CCDC88A-206ENST00000430086 ATP2B3Q16720 1220 aa7.37□□□□□ -1.23
CCDC88A-206ENST00000430086 SPRED1Q7Z699 444 aa7.37□□□□□ -1.23
CCDC88A-206ENST00000430086 SYT12Q8IV01 421 aa7.37□□□□□ -1.23
CCDC88A-206ENST00000430086 CLPTM1LQ96KA5 538 aa7.37□□□□□ -1.23
CCDC88A-206ENST00000430086 AIFM3Q96NN9 605 aa7.37□□□□□ -1.23
CCDC88A-206ENST00000430086 PARPBPQ9NWS1 579 aa7.37□□□□□ -1.23
CCDC88A-206ENST00000430086 POGKQ9P215 609 aa7.37□□□□□ -1.23
CCDC88A-206ENST00000430086 POMCP01189 267 aa7.36□□□□□ -1.23
CCDC88A-206ENST00000430086 AMHP03971 560 aa7.36□□□□□ -1.23
CCDC88A-206ENST00000430086 TLE1Q04724 770 aa7.36□□□□□ -1.23
CCDC88A-206ENST00000430086 RABL3Q5HYI8 236 aa7.36□□□□□ -1.23
CCDC88A-206ENST00000430086 ATAT1Q5SQI0 421 aa7.36□□□□□ -1.23
CCDC88A-206ENST00000430086 RNF169Q8NCN4 708 aa7.36□□□□□ -1.23
CCDC88A-206ENST00000430086 RAB24Q969Q5 203 aa7.36□□□□□ -1.23
CCDC88A-206ENST00000430086 ZNF503Q96F45 646 aa7.36□□□□□ -1.23
CCDC88A-206ENST00000430086 DCLRE1CQ96SD1 692 aaKnown RBP7.36□□□□□ -1.23
CCDC88A-206ENST00000430086 MYOCQ99972 504 aa7.36□□□□□ -1.23
CCDC88A-206ENST00000430086 GTPBP4Q9BZE4 634 aaKnown RBP7.36□□□□□ -1.23
CCDC88A-206ENST00000430086 C11orf54Q9H0W9 315 aaPredicted RBP7.36□□□□□ -1.23
CCDC88A-206ENST00000430086 METTL14Q9HCE5 456 aaKnown RBP7.36□□□□□ -1.23
CCDC88A-206ENST00000430086 DRGXA6NNA5 263 aa7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 DIRC3C9JPN6 131 aa7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 SLC16A6O15403 523 aa7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 INSRRP14616 1297 aa7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 FXR1P51114 621 aaKnown RBP eCLIP7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 RAP2BP61225 183 aa7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 FOXE3Q13461 319 aa7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 GTF2H3Q13889 308 aa7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 UBXN2BQ14CS0 331 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms