RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 DNM1LO00429 736 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 TGFB3P10600 412 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 INTS8Q75QN2 995 aaKnown RBP10.43□□□□□ -0.74
USP54-205ENST00000424265 CCDC84Q86UT8 332 aaPredicted RBP10.43□□□□□ -0.74
USP54-205ENST00000424265 SMC6Q96SB8 1091 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 BPIFA3Q9BQP9 254 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 JPH1Q9HDC5 661 aaPredicted RBP10.43□□□□□ -0.74
USP54-205ENST00000424265 PLAAQ9Y263 795 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 KIF28PB7ZC32 967 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 TRAF5O00463 557 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 PYGMP11217 842 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 FUT4P22083 530 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 C2orf54Q08AI8 447 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 LACTB2Q53H82 288 aaPredicted RBP10.43□□□□□ -0.74
USP54-205ENST00000424265 PPP4R3CPQ6ZMV5 832 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 FAM217BQ9NTX9 383 aaPredicted RBP10.43□□□□□ -0.74
USP54-205ENST00000424265 MYH13Q9UKX3 1938 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 IGF2BP3O00425 579 aaKnown RBP eCLIP10.43□□□□□ -0.74
USP54-205ENST00000424265 IKBKBO14920 756 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 KRT86O43790 486 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 GCNT3O95395 438 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 LMNAP02545 664 aaKnown RBP10.43□□□□□ -0.74
USP54-205ENST00000424265 PLA2G4BP0C869 781 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 ATP6V1C1P21283 382 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 PTPN21Q16825 1174 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 SGSM1Q2NKQ1 1148 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 FAM102BQ5T8I3 360 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 ZNF746Q6NUN9 644 aaPredicted RBP10.43□□□□□ -0.74
USP54-205ENST00000424265 SCUBE1Q8IWY4 988 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 MYO1HQ8N1T3 1032 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 CEP170P1Q96L14 293 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 SCAF8Q9UPN6 1271 aaKnown RBP10.43□□□□□ -0.74
USP54-205ENST00000424265 AFG3L2Q9Y4W6 797 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 NVLO15381 856 aaKnown RBP10.43□□□□□ -0.74
USP54-205ENST00000424265 CYP3A4P08684 503 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 ATICP31939 592 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 ITGB3BPQ13352 177 aaPredicted RBP10.43□□□□□ -0.74
USP54-205ENST00000424265 LAMC2Q13753 1193 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 RAET1EQ8TD07 263 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 ADPGKQ9BRR6 497 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 DDX23Q9BUQ8 820 aaKnown RBP10.43□□□□□ -0.74
USP54-205ENST00000424265 ZNF302Q9NR11 478 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 STOML1Q9UBI4 398 aa10.43□□□□□ -0.74
USP54-205ENST00000424265 SLX4Q8IY92 1834 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 MAP3K7O43318 606 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 ADCY3O60266 1144 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 IDO1P14902 403 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 FOSL1P15407 271 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 BASP1P80723 227 aaKnown RBP10.42□□□□□ -0.74
USP54-205ENST00000424265 DEFB115Q30KQ5 88 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 GJC2Q5T442 439 aaPredicted RBP10.42□□□□□ -0.74
USP54-205ENST00000424265 LMBRD2Q68DH5 695 aaPredicted RBP10.42□□□□□ -0.74
USP54-205ENST00000424265 DYMQ7RTS9 669 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 VPS37AQ8NEZ2 397 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 FNBP1Q96RU3 617 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 INO80BQ9C086 356 aaPredicted RBP10.42□□□□□ -0.74
USP54-205ENST00000424265 CNTNAP1P78357 1384 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 PLCG1P19174 1290 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 CETN2P41208 172 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 TMEM259Q4ZIN3 620 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 CCDC122Q5T0U0 273 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 NLRP9Q7RTR0 991 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 CSGALNACT2Q8N6G5 542 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 SKA1Q96BD8 255 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 RAB17Q9H0T7 212 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 CHD4Q14839 1912 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 HTR3EA5X5Y0 456 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 SRRM3A6NNA2 597 aaPredicted RBP10.42□□□□□ -0.74
USP54-205ENST00000424265 H0Y3Z8 333 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 KPNA6O60684 536 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.42□□□□□ -0.74
USP54-205ENST00000424265 SEPT1Q8WYJ6 367 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 RAD54LQ92698 747 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 PARVGQ9HBI0 331 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 EMILIN3Q9NT22 766 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 ITIH6Q6UXX5 1313 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 A0A0G2JLL6 359 aaPredicted RBP10.42□□□□□ -0.74
USP54-205ENST00000424265 E7ENQ6 273 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 TOMM70O94826 608 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 TDP2O95551 362 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 HSPA1AP0DMV8 641 aaKnown RBP10.42□□□□□ -0.74
USP54-205ENST00000424265 HSPA1BP0DMV9 641 aaKnown RBP10.42□□□□□ -0.74
USP54-205ENST00000424265 ERVK-9P63128 1117 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 ERVK-24P63145 666 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 CYP4A11Q02928 519 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 ZNF658Q5TYW1 1059 aaPredicted RBP10.42□□□□□ -0.74
USP54-205ENST00000424265 NEK10Q6ZWH5 1172 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 PRRT2Q7Z6L0 340 aaPredicted RBP10.42□□□□□ -0.74
USP54-205ENST00000424265 TMTC1Q8IUR5 882 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 NUDCD1Q96RS6 583 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 VTA1Q9NP79 307 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 FBXO2Q9UK22 296 aaPredicted RBP10.42□□□□□ -0.74
USP54-205ENST00000424265 CTNND2Q9UQB3 1225 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 MYH2Q9UKX2 1941 aa10.42□□□□□ -0.74
USP54-205ENST00000424265 SLC15A5A6NIM6 579 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 ENC1O14682 589 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 KRT75O95678 551 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 SPA17Q15506 151 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 C14orf80Q86SX3 495 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 UBLCP1Q8WVY7 318 aaPredicted RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms