RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 PARNO95453 639 aaKnown RBP3.4□□□□□ -1.87
VPS41-206ENST00000418457 AMY1AP04745 511 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 SNRPA1P09661 255 aaKnown RBP3.4□□□□□ -1.87
VPS41-206ENST00000418457 HSPA6P17066 643 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 DDCP20711 480 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 FPR1P21462 350 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 HIBADHP31937 336 aaKnown RBP3.4□□□□□ -1.87
VPS41-206ENST00000418457 TARDBPQ13148 414 aaKnown RBP eCLIP3.4□□□□□ -1.87
VPS41-206ENST00000418457 MTM1Q13496 603 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 GTF2H3Q13889 308 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 RAB39AQ14964 217 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 MLC1Q15049 377 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 ATP2B3Q16720 1220 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 PGS1Q32NB8 556 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 ATAT1Q5SQI0 421 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 AFMIDQ63HM1 303 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 NXNQ6DKJ4 435 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 ZNF585AQ6P3V2 769 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 MAMDC4Q6UXC1 1216 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 Q6ZSN1 163 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 XYLT1Q86Y38 959 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 FMNL3Q8IVF7 1028 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 GSPT2Q8IYD1 628 aaKnown RBP3.4□□□□□ -1.87
VPS41-206ENST00000418457 TCEAL8Q8IYN2 117 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 MYO1HQ8N1T3 1032 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 PRR18Q8N4B5 295 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 ZGPATQ8N5A5 531 aaKnown RBP3.4□□□□□ -1.87
VPS41-206ENST00000418457 MDGA1Q8NFP4 955 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 ATXN2LQ8WWM7 1075 aaKnown RBP3.4□□□□□ -1.87
VPS41-206ENST00000418457 EDAQ92838 391 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 TSR2Q969E8 191 aaKnown RBP3.4□□□□□ -1.87
VPS41-206ENST00000418457 HPS3Q969F9 1004 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 CLIP3Q96DZ5 547 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 MVB12AQ96EY5 273 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 CLPTM1LQ96KA5 538 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 C8orf49Q96NF6 230 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 WWC2-AS2Q96NR7 200 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 ADOQ96SZ5 270 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 MAP3K14Q99558 947 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 LSM14BQ9BX40 385 aaKnown RBP3.4□□□□□ -1.87
VPS41-206ENST00000418457 KCNH6Q9H252 994 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 CHPF2Q9P2E5 772 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 CLCA2Q9UQC9 943 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 JAG2Q9Y219 1238 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 PCDHB1Q9Y5F3 818 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 ACTL7AQ9Y615 435 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 MAP3K1Q13233 1512 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 RUSC2Q8N2Y8 1516 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 THOC2Q8NI27 1593 aaKnown RBP3.39□□□□□ -1.87
VPS41-206ENST00000418457 GOLGA6CA6NDK9 693 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 GOLGA6BA6NDN3 693 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 TBKBP1A7MCY6 615 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 CXorf49A8MYA2 514 aaPredicted RBP3.39□□□□□ -1.87
VPS41-206ENST00000418457 MUSKO15146 869 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 PRPF3O43395 683 aaKnown RBP3.39□□□□□ -1.87
VPS41-206ENST00000418457 GOLGA6DP0CG33 693 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 ATP5JP18859 108 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 HK1P19367 917 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 LPOP22079 712 aaPredicted RBP3.39□□□□□ -1.87
VPS41-206ENST00000418457 PCSK1P29120 753 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 MAGEA10P43363 369 aaPredicted RBP3.39□□□□□ -1.87
VPS41-206ENST00000418457 ALDH1A3P47895 512 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 CLRN1P58418 232 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 CTXN1P60606 82 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 ATP8B2P98198 1209 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 DSC2Q02487 901 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 ZNF267Q14586 743 aaPredicted RBP3.39□□□□□ -1.87
VPS41-206ENST00000418457 BMT2Q1RMZ1 405 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 DCAF17Q5H9S7 520 aaPredicted RBP3.39□□□□□ -1.87
VPS41-206ENST00000418457 METTL24Q5JXM2 366 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 THEMIS2Q5TEJ8 643 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 SPTY2D1Q68D10 685 aaPredicted RBP3.39□□□□□ -1.87
VPS41-206ENST00000418457 ANKS6Q68DC2 871 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 OTUD7BQ6GQQ9 843 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 GADL1Q6ZQY3 521 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 EPM2AIP1Q7L775 607 aaPredicted RBP3.39□□□□□ -1.87
VPS41-206ENST00000418457 KRTAP1-3Q8IUG1 177 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 WDR75Q8IWA0 830 aaKnown RBP3.39□□□□□ -1.87
VPS41-206ENST00000418457 GRAMD1CQ8IYS0 662 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 MAGEB6Q8N7X4 407 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 OR52N2Q8NGI0 321 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 ZFP28Q8NHY6 868 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 SLC35B2Q8TB61 432 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 IFI44Q8TCB0 444 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 NSUN6Q8TEA1 469 aaKnown RBP3.39□□□□□ -1.87
VPS41-206ENST00000418457 TFAP2CQ92754 450 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 RGMAQ96B86 450 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 C1GALT1C1Q96EU7 318 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 MRGPRX4Q96LA9 322 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 MRI1Q9BV20 369 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 KLC2Q9H0B6 622 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 SLC12A5Q9H2X9 1139 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 SPON1Q9HCB6 807 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 KMT5AQ9NQR1 393 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 MAN1C1Q9NR34 630 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 GOLGA6AQ9NYA3 693 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 CALCOCO1Q9P1Z2 691 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 RUVBL1Q9Y265 456 aaKnown RBP3.39□□□□□ -1.87
VPS41-206ENST00000418457 NESP48681 1621 aa3.39□□□□□ -1.87
VPS41-206ENST00000418457 BTBD11A6QL63 1104 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms